X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FJalviewModelSequence.java;h=5ff56dd3c048ad849752104302478e27c773f0fb;hb=9b7eea2235d2d68b0b89899b9ec725af1b2f3184;hp=c3f818231d5072ce82738e91401bd0fe9bc579a9;hpb=8dbf6e85ebb3dbcd84635f194457cd4dc65010cf;p=jalview.git
diff --git a/src/jalview/schemabinding/version2/JalviewModelSequence.java b/src/jalview/schemabinding/version2/JalviewModelSequence.java
index c3f8182..5ff56dd 100644
--- a/src/jalview/schemabinding/version2/JalviewModelSequence.java
+++ b/src/jalview/schemabinding/version2/JalviewModelSequence.java
@@ -1,23 +1,3 @@
-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $(date) The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see .
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- *******************************************************************************/
/*
* This class was automatically generated with
* Castor 1.1, using an XML
@@ -76,6 +56,11 @@ public class JalviewModelSequence implements java.io.Serializable
*/
private jalview.schemabinding.version2.FeatureSettings _featureSettings;
+ /**
+ * List of external trees
+ */
+ private java.util.Vector _extTreeList;
+
// ----------------/
// - Constructors -/
// ----------------/
@@ -88,6 +73,7 @@ public class JalviewModelSequence implements java.io.Serializable
this._viewportList = new java.util.Vector();
this._userColoursList = new java.util.Vector();
this._treeList = new java.util.Vector();
+ this._extTreeList = new java.util.Vector<>();
}
// -----------/
@@ -178,6 +164,16 @@ public class JalviewModelSequence implements java.io.Serializable
this._treeList.add(index, vTree);
}
+ public void addExtTreeViewer(jalview.ext.treeviewer.TreeFrameI treeViewer)
+ {
+ this._extTreeList.add(treeViewer);
+ }
+
+ public void addExtTreeViewer(final int index,
+ jalview.ext.treeviewer.TreeFrameI treeViewer)
+ {
+ this._extTreeList.add(index, treeViewer);
+ }
/**
*
*
@@ -446,6 +442,31 @@ public class JalviewModelSequence implements java.io.Serializable
return this._treeList.size();
}
+ public jalview.ext.treeviewer.TreeFrameI getExtTreeViewer(final int index)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._extTreeList.size())
+ {
+ throw new IndexOutOfBoundsException("getExtTreeViewer: Index value '"
+ + index + "' not in range [0.."
+ + (this._extTreeList.size() - 1) + "]");
+ }
+
+ return _extTreeList.get(index);
+ }
+
+ public jalview.ext.treeviewer.TreeFrameI[] getExtTreeViewer()
+ {
+ jalview.ext.treeviewer.TreeFrameI[] array = new jalview.ext.treeviewer.TreeFrameI[0];
+ return this._extTreeList.toArray(array);
+ }
+
+ public int getExtTreeViewerCount()
+ {
+ return this._extTreeList.size();
+ }
+
/**
* Method getUserColours.
*