X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FPdbentry.java;h=6721c5b1455212ddec0ef1ea47cc8d75d42ae68e;hb=6b71746c98f7c1118b474b0b920db3bd7b2a15c0;hp=1d4fff06224db0a7f494dd4b062a94ffd114032f;hpb=506d60f0e188723ddc91c26824b41ac7034df3fe;p=jalview.git diff --git a/src/jalview/schemabinding/version2/Pdbentry.java b/src/jalview/schemabinding/version2/Pdbentry.java index 1d4fff0..6721c5b 100755 --- a/src/jalview/schemabinding/version2/Pdbentry.java +++ b/src/jalview/schemabinding/version2/Pdbentry.java @@ -1,26 +1,25 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4) - * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) + * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. + * This file is part of Jalview. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . */ package jalview.schemabinding.version2; -// ---------------------------------/ -// - Imported classes and packages -/ -// ---------------------------------/ +//---------------------------------/ +//- Imported classes and packages -/ +//---------------------------------/ import org.exolab.castor.xml.Marshaller; import org.exolab.castor.xml.Unmarshaller; @@ -76,7 +75,7 @@ public class Pdbentry implements java.io.Serializable * * @param vPdbentryItem * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection + * if the index given is outside the bounds of the collection */ public void addPdbentryItem( final jalview.schemabinding.version2.PdbentryItem vPdbentryItem) @@ -91,7 +90,7 @@ public class Pdbentry implements java.io.Serializable * @param index * @param vPdbentryItem * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection + * if the index given is outside the bounds of the collection */ public void addPdbentryItem(final int index, final jalview.schemabinding.version2.PdbentryItem vPdbentryItem) @@ -136,7 +135,7 @@ public class Pdbentry implements java.io.Serializable * * @param index * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection + * if the index given is outside the bounds of the collection * @return the value of the jalview.schemabinding.version2.PdbentryItem at the * given inde */ @@ -212,11 +211,10 @@ public class Pdbentry implements java.io.Serializable * * @param out * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling + * if object is null or if any SAXException is thrown during + * marshaling * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the - * schema + * if this object is an invalid instance according to the schema */ public void marshal(final java.io.Writer out) throws org.exolab.castor.xml.MarshalException, @@ -230,13 +228,12 @@ public class Pdbentry implements java.io.Serializable * * @param handler * @throws java.io.IOException - * if an IOException occurs during marshaling + * if an IOException occurs during marshaling * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the - * schema + * if this object is an invalid instance according to the schema * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling + * if object is null or if any SAXException is thrown during + * marshaling */ public void marshal(final org.xml.sax.ContentHandler handler) throws java.io.IOException, @@ -247,7 +244,7 @@ public class Pdbentry implements java.io.Serializable } /** - */ + */ public void removeAllPdbentryItem() { this._items.clear(); @@ -283,7 +280,7 @@ public class Pdbentry implements java.io.Serializable * Sets the value of field 'file'. * * @param file - * the value of field 'file'. + * the value of field 'file'. */ public void setFile(final java.lang.String file) { @@ -294,7 +291,7 @@ public class Pdbentry implements java.io.Serializable * Sets the value of field 'id'. * * @param id - * the value of field 'id'. + * the value of field 'id'. */ public void setId(final java.lang.String id) { @@ -307,7 +304,7 @@ public class Pdbentry implements java.io.Serializable * @param index * @param vPdbentryItem * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection + * if the index given is outside the bounds of the collection */ public void setPdbentryItem(final int index, final jalview.schemabinding.version2.PdbentryItem vPdbentryItem) @@ -345,7 +342,7 @@ public class Pdbentry implements java.io.Serializable * Sets the value of field 'type'. * * @param type - * the value of field 'type'. + * the value of field 'type'. */ public void setType(final java.lang.String type) { @@ -357,11 +354,10 @@ public class Pdbentry implements java.io.Serializable * * @param reader * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling + * if object is null or if any SAXException is thrown during + * marshaling * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the - * schema + * if this object is an invalid instance according to the schema * @return the unmarshaled jalview.schemabinding.version2.Pdbentry */ public static jalview.schemabinding.version2.Pdbentry unmarshal( @@ -378,8 +374,7 @@ public class Pdbentry implements java.io.Serializable * * * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the - * schema + * if this object is an invalid instance according to the schema */ public void validate() throws org.exolab.castor.xml.ValidationException {