X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FPdbentry.java;h=f4fa4fe44e63614cb1ee67040860505e18fe8011;hb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;hp=93c274832c61d6872199813f383de448bdde9230;hpb=dd74fc4938723fe5ec48d4e5fdcfbe58ac42a48d;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/Pdbentry.java b/src/jalview/schemabinding/version2/Pdbentry.java
index 93c2748..f4fa4fe 100755
--- a/src/jalview/schemabinding/version2/Pdbentry.java
+++ b/src/jalview/schemabinding/version2/Pdbentry.java
@@ -1,5 +1,5 @@
 /*
- * This class was automatically generated with 
+ * This class was automatically generated with
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
  * Schema.
  * $Id$
@@ -7,346 +7,358 @@
 
 package jalview.schemabinding.version2;
 
-  //---------------------------------/
- //- Imported classes and packages -/
 //---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import java.util.*;
 
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
-import java.util.Enumeration;
-import java.util.Vector;
-import org.exolab.castor.xml.MarshalException;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-import org.xml.sax.ContentHandler;
+import org.exolab.castor.xml.*;
 
 /**
  * Class Pdbentry.
- * 
+ *
  * @version $Revision$ $Date$
  */
-public class Pdbentry implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _id
-     */
-    private java.lang.String _id;
-
-    /**
-     * Field _type
-     */
-    private java.lang.String _type;
-
-    /**
-     * Field _file
-     */
-    private java.lang.String _file;
-
-    /**
-     * Field _items
-     */
-    private java.util.Vector _items;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public Pdbentry() {
-        super();
-        _items = new Vector();
-    } //-- jalview.schemabinding.version2.Pdbentry()
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * Method addPdbentryItem
-     * 
-     * 
-     * 
-     * @param vPdbentryItem
-     */
-    public void addPdbentryItem(jalview.schemabinding.version2.PdbentryItem vPdbentryItem)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        _items.addElement(vPdbentryItem);
-    } //-- void addPdbentryItem(jalview.schemabinding.version2.PdbentryItem) 
-
-    /**
-     * Method addPdbentryItem
-     * 
-     * 
-     * 
-     * @param index
-     * @param vPdbentryItem
-     */
-    public void addPdbentryItem(int index, jalview.schemabinding.version2.PdbentryItem vPdbentryItem)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        _items.insertElementAt(vPdbentryItem, index);
-    } //-- void addPdbentryItem(int, jalview.schemabinding.version2.PdbentryItem) 
-
-    /**
-     * Method enumeratePdbentryItem
-     * 
-     * 
-     * 
-     * @return Enumeration
-     */
-    public java.util.Enumeration enumeratePdbentryItem()
-    {
-        return _items.elements();
-    } //-- java.util.Enumeration enumeratePdbentryItem() 
-
-    /**
-     * Returns the value of field 'file'.
-     * 
-     * @return String
-     * @return the value of field 'file'.
-     */
-    public java.lang.String getFile()
-    {
-        return this._file;
-    } //-- java.lang.String getFile() 
-
-    /**
-     * Returns the value of field 'id'.
-     * 
-     * @return String
-     * @return the value of field 'id'.
-     */
-    public java.lang.String getId()
-    {
-        return this._id;
-    } //-- java.lang.String getId() 
-
-    /**
-     * Method getPdbentryItem
-     * 
-     * 
-     * 
-     * @param index
-     * @return PdbentryItem
-     */
-    public jalview.schemabinding.version2.PdbentryItem getPdbentryItem(int index)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        //-- check bounds for index
-        if ((index < 0) || (index > _items.size())) {
-            throw new IndexOutOfBoundsException();
-        }
-        
-        return (jalview.schemabinding.version2.PdbentryItem) _items.elementAt(index);
-    } //-- jalview.schemabinding.version2.PdbentryItem getPdbentryItem(int) 
-
-    /**
-     * Method getPdbentryItem
-     * 
-     * 
-     * 
-     * @return PdbentryItem
-     */
-    public jalview.schemabinding.version2.PdbentryItem[] getPdbentryItem()
-    {
-        int size = _items.size();
-        jalview.schemabinding.version2.PdbentryItem[] mArray = new jalview.schemabinding.version2.PdbentryItem[size];
-        for (int index = 0; index < size; index++) {
-            mArray[index] = (jalview.schemabinding.version2.PdbentryItem) _items.elementAt(index);
-        }
-        return mArray;
-    } //-- jalview.schemabinding.version2.PdbentryItem[] getPdbentryItem() 
-
-    /**
-     * Method getPdbentryItemCount
-     * 
-     * 
-     * 
-     * @return int
-     */
-    public int getPdbentryItemCount()
-    {
-        return _items.size();
-    } //-- int getPdbentryItemCount() 
-
-    /**
-     * Returns the value of field 'type'.
-     * 
-     * @return String
-     * @return the value of field 'type'.
-     */
-    public java.lang.String getType()
-    {
-        return this._type;
-    } //-- java.lang.String getType() 
-
-    /**
-     * Method isValid
-     * 
-     * 
-     * 
-     * @return boolean
-     */
-    public boolean isValid()
-    {
-        try {
-            validate();
-        }
-        catch (org.exolab.castor.xml.ValidationException vex) {
-            return false;
-        }
-        return true;
-    } //-- boolean isValid() 
-
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param out
-     */
-    public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer) 
-
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param handler
-     */
-    public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler) 
-
-    /**
-     * Method removeAllPdbentryItem
-     * 
-     */
-    public void removeAllPdbentryItem()
-    {
-        _items.removeAllElements();
-    } //-- void removeAllPdbentryItem() 
-
-    /**
-     * Method removePdbentryItem
-     * 
-     * 
-     * 
-     * @param index
-     * @return PdbentryItem
-     */
-    public jalview.schemabinding.version2.PdbentryItem removePdbentryItem(int index)
-    {
-        java.lang.Object obj = _items.elementAt(index);
-        _items.removeElementAt(index);
-        return (jalview.schemabinding.version2.PdbentryItem) obj;
-    } //-- jalview.schemabinding.version2.PdbentryItem removePdbentryItem(int) 
-
-    /**
-     * Sets the value of field 'file'.
-     * 
-     * @param file the value of field 'file'.
-     */
-    public void setFile(java.lang.String file)
-    {
-        this._file = file;
-    } //-- void setFile(java.lang.String) 
-
-    /**
-     * Sets the value of field 'id'.
-     * 
-     * @param id the value of field 'id'.
-     */
-    public void setId(java.lang.String id)
+public class Pdbentry
+    implements java.io.Serializable
+{
+
+  //--------------------------/
+  //- Class/Member Variables -/
+  //--------------------------/
+
+  /**
+   * Field _id
+   */
+  private java.lang.String _id;
+
+  /**
+   * Field _type
+   */
+  private java.lang.String _type;
+
+  /**
+   * Field _file
+   */
+  private java.lang.String _file;
+
+  /**
+   * Field _items
+   */
+  private java.util.Vector _items;
+
+  //----------------/
+  //- Constructors -/
+  //----------------/
+
+  public Pdbentry()
+  {
+    super();
+    _items = new Vector();
+  } //-- jalview.schemabinding.version2.Pdbentry()
+
+  //-----------/
+  //- Methods -/
+  //-----------/
+
+  /**
+   * Method addPdbentryItem
+   *
+   *
+   *
+   * @param vPdbentryItem
+   */
+  public void addPdbentryItem(jalview.schemabinding.version2.PdbentryItem
+                              vPdbentryItem)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    _items.addElement(vPdbentryItem);
+  } //-- void addPdbentryItem(jalview.schemabinding.version2.PdbentryItem)
+
+  /**
+   * Method addPdbentryItem
+   *
+   *
+   *
+   * @param index
+   * @param vPdbentryItem
+   */
+  public void addPdbentryItem(int index,
+                              jalview.schemabinding.version2.PdbentryItem
+                              vPdbentryItem)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    _items.insertElementAt(vPdbentryItem, index);
+  } //-- void addPdbentryItem(int, jalview.schemabinding.version2.PdbentryItem)
+
+  /**
+   * Method enumeratePdbentryItem
+   *
+   *
+   *
+   * @return Enumeration
+   */
+  public java.util.Enumeration enumeratePdbentryItem()
+  {
+    return _items.elements();
+  } //-- java.util.Enumeration enumeratePdbentryItem()
+
+  /**
+   * Returns the value of field 'file'.
+   *
+   * @return String
+   * @return the value of field 'file'.
+   */
+  public java.lang.String getFile()
+  {
+    return this._file;
+  } //-- java.lang.String getFile()
+
+  /**
+   * Returns the value of field 'id'.
+   *
+   * @return String
+   * @return the value of field 'id'.
+   */
+  public java.lang.String getId()
+  {
+    return this._id;
+  } //-- java.lang.String getId()
+
+  /**
+   * Method getPdbentryItem
+   *
+   *
+   *
+   * @param index
+   * @return PdbentryItem
+   */
+  public jalview.schemabinding.version2.PdbentryItem getPdbentryItem(int index)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    //-- check bounds for index
+    if ( (index < 0) || (index > _items.size()))
     {
-        this._id = id;
-    } //-- void setId(java.lang.String) 
-
-    /**
-     * Method setPdbentryItem
-     * 
-     * 
-     * 
-     * @param index
-     * @param vPdbentryItem
-     */
-    public void setPdbentryItem(int index, jalview.schemabinding.version2.PdbentryItem vPdbentryItem)
-        throws java.lang.IndexOutOfBoundsException
+      throw new IndexOutOfBoundsException();
+    }
+
+    return (jalview.schemabinding.version2.PdbentryItem) _items.elementAt(index);
+  } //-- jalview.schemabinding.version2.PdbentryItem getPdbentryItem(int)
+
+  /**
+   * Method getPdbentryItem
+   *
+   *
+   *
+   * @return PdbentryItem
+   */
+  public jalview.schemabinding.version2.PdbentryItem[] getPdbentryItem()
+  {
+    int size = _items.size();
+    jalview.schemabinding.version2.PdbentryItem[] mArray = new jalview.
+        schemabinding.version2.PdbentryItem[size];
+    for (int index = 0; index < size; index++)
     {
-        //-- check bounds for index
-        if ((index < 0) || (index > _items.size())) {
-            throw new IndexOutOfBoundsException();
-        }
-        _items.setElementAt(vPdbentryItem, index);
-    } //-- void setPdbentryItem(int, jalview.schemabinding.version2.PdbentryItem) 
-
-    /**
-     * Method setPdbentryItem
-     * 
-     * 
-     * 
-     * @param pdbentryItemArray
-     */
-    public void setPdbentryItem(jalview.schemabinding.version2.PdbentryItem[] pdbentryItemArray)
+      mArray[index] = (jalview.schemabinding.version2.PdbentryItem) _items.
+          elementAt(index);
+    }
+    return mArray;
+  } //-- jalview.schemabinding.version2.PdbentryItem[] getPdbentryItem()
+
+  /**
+   * Method getPdbentryItemCount
+   *
+   *
+   *
+   * @return int
+   */
+  public int getPdbentryItemCount()
+  {
+    return _items.size();
+  } //-- int getPdbentryItemCount()
+
+  /**
+   * Returns the value of field 'type'.
+   *
+   * @return String
+   * @return the value of field 'type'.
+   */
+  public java.lang.String getType()
+  {
+    return this._type;
+  } //-- java.lang.String getType()
+
+  /**
+   * Method isValid
+   *
+   *
+   *
+   * @return boolean
+   */
+  public boolean isValid()
+  {
+    try
     {
-        //-- copy array
-        _items.removeAllElements();
-        for (int i = 0; i < pdbentryItemArray.length; i++) {
-            _items.addElement(pdbentryItemArray[i]);
-        }
-    } //-- void setPdbentryItem(jalview.schemabinding.version2.PdbentryItem) 
-
-    /**
-     * Sets the value of field 'type'.
-     * 
-     * @param type the value of field 'type'.
-     */
-    public void setType(java.lang.String type)
+      validate();
+    }
+    catch (org.exolab.castor.xml.ValidationException vex)
     {
-        this._type = type;
-    } //-- void setType(java.lang.String) 
-
-    /**
-     * Method unmarshal
-     * 
-     * 
-     * 
-     * @param reader
-     * @return Object
-     */
-    public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+      return false;
+    }
+    return true;
+  } //-- boolean isValid()
+
+  /**
+   * Method marshal
+   *
+   *
+   *
+   * @param out
+   */
+  public void marshal(java.io.Writer out)
+      throws org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
+
+    Marshaller.marshal(this, out);
+  } //-- void marshal(java.io.Writer)
+
+  /**
+   * Method marshal
+   *
+   *
+   *
+   * @param handler
+   */
+  public void marshal(org.xml.sax.ContentHandler handler)
+      throws java.io.IOException, org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
+
+    Marshaller.marshal(this, handler);
+  } //-- void marshal(org.xml.sax.ContentHandler)
+
+  /**
+   * Method removeAllPdbentryItem
+   *
+   */
+  public void removeAllPdbentryItem()
+  {
+    _items.removeAllElements();
+  } //-- void removeAllPdbentryItem()
+
+  /**
+   * Method removePdbentryItem
+   *
+   *
+   *
+   * @param index
+   * @return PdbentryItem
+   */
+  public jalview.schemabinding.version2.PdbentryItem removePdbentryItem(int
+      index)
+  {
+    java.lang.Object obj = _items.elementAt(index);
+    _items.removeElementAt(index);
+    return (jalview.schemabinding.version2.PdbentryItem) obj;
+  } //-- jalview.schemabinding.version2.PdbentryItem removePdbentryItem(int)
+
+  /**
+   * Sets the value of field 'file'.
+   *
+   * @param file the value of field 'file'.
+   */
+  public void setFile(java.lang.String file)
+  {
+    this._file = file;
+  } //-- void setFile(java.lang.String)
+
+  /**
+   * Sets the value of field 'id'.
+   *
+   * @param id the value of field 'id'.
+   */
+  public void setId(java.lang.String id)
+  {
+    this._id = id;
+  } //-- void setId(java.lang.String)
+
+  /**
+   * Method setPdbentryItem
+   *
+   *
+   *
+   * @param index
+   * @param vPdbentryItem
+   */
+  public void setPdbentryItem(int index,
+                              jalview.schemabinding.version2.PdbentryItem
+                              vPdbentryItem)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    //-- check bounds for index
+    if ( (index < 0) || (index > _items.size()))
     {
-        return (jalview.schemabinding.version2.Pdbentry) Unmarshaller.unmarshal(jalview.schemabinding.version2.Pdbentry.class, reader);
-    } //-- java.lang.Object unmarshal(java.io.Reader) 
-
-    /**
-     * Method validate
-     * 
-     */
-    public void validate()
-        throws org.exolab.castor.xml.ValidationException
+      throw new IndexOutOfBoundsException();
+    }
+    _items.setElementAt(vPdbentryItem, index);
+  } //-- void setPdbentryItem(int, jalview.schemabinding.version2.PdbentryItem)
+
+  /**
+   * Method setPdbentryItem
+   *
+   *
+   *
+   * @param pdbentryItemArray
+   */
+  public void setPdbentryItem(jalview.schemabinding.version2.PdbentryItem[]
+                              pdbentryItemArray)
+  {
+    //-- copy array
+    _items.removeAllElements();
+    for (int i = 0; i < pdbentryItemArray.length; i++)
     {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
-    } //-- void validate() 
+      _items.addElement(pdbentryItemArray[i]);
+    }
+  } //-- void setPdbentryItem(jalview.schemabinding.version2.PdbentryItem)
+
+  /**
+   * Sets the value of field 'type'.
+   *
+   * @param type the value of field 'type'.
+   */
+  public void setType(java.lang.String type)
+  {
+    this._type = type;
+  } //-- void setType(java.lang.String)
+
+  /**
+   * Method unmarshal
+   *
+   *
+   *
+   * @param reader
+   * @return Object
+   */
+  public static java.lang.Object unmarshal(java.io.Reader reader)
+      throws org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
+    return (jalview.schemabinding.version2.Pdbentry) Unmarshaller.unmarshal(
+        jalview.schemabinding.version2.Pdbentry.class, reader);
+  } //-- java.lang.Object unmarshal(java.io.Reader)
+
+  /**
+   * Method validate
+   *
+   */
+  public void validate()
+      throws org.exolab.castor.xml.ValidationException
+  {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.
+        Validator();
+    validator.validate(this);
+  } //-- void validate()
 
 }