X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FPdbentryItem.java;h=18dc89b65d79cb489e117ecd93709784ed66fe3d;hb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;hp=3dbc99c882cf7dc8cc8634b2e1c6e884cc0d8908;hpb=cd07a161a10680208029f76aa46710c1032aae46;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/PdbentryItem.java b/src/jalview/schemabinding/version2/PdbentryItem.java
old mode 100755
new mode 100644
index 3dbc99c..18dc89b
--- a/src/jalview/schemabinding/version2/PdbentryItem.java
+++ b/src/jalview/schemabinding/version2/PdbentryItem.java
@@ -1,192 +1,215 @@
-/*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.schemabinding.version2;
-
-/**
- * Class PdbentryItem.
- * 
- * @version $Revision$ $Date$
- */
-public class PdbentryItem implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _propertyList.
-     */
-    private java.util.Vector _propertyList;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public PdbentryItem() {
-        super();
-        this._propertyList = new java.util.Vector();
-    }
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * 
-     * 
-     * @param vProperty
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     */
-    public void addProperty(
-            final jalview.schemabinding.version2.Property vProperty)
-    throws java.lang.IndexOutOfBoundsException {
-        this._propertyList.addElement(vProperty);
-    }
-
-    /**
-     * 
-     * 
-     * @param index
-     * @param vProperty
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     */
-    public void addProperty(
-            final int index,
-            final jalview.schemabinding.version2.Property vProperty)
-    throws java.lang.IndexOutOfBoundsException {
-        this._propertyList.add(index, vProperty);
-    }
-
-    /**
-     * Method enumerateProperty.
-     * 
-     * @return an Enumeration over all
-     * jalview.schemabinding.version2.Property elements
-     */
-    public java.util.Enumeration enumerateProperty(
-    ) {
-        return this._propertyList.elements();
-    }
-
-    /**
-     * Method getProperty.
-     * 
-     * @param index
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     * @return the value of the
-     * jalview.schemabinding.version2.Property at the given index
-     */
-    public jalview.schemabinding.version2.Property getProperty(
-            final int index)
-    throws java.lang.IndexOutOfBoundsException {
-        // check bounds for index
-        if (index < 0 || index >= this._propertyList.size()) {
-            throw new IndexOutOfBoundsException("getProperty: Index value '" + index + "' not in range [0.." + (this._propertyList.size() - 1) + "]");
-        }
-        
-        return (jalview.schemabinding.version2.Property) _propertyList.get(index);
-    }
-
-    /**
-     * Method getProperty.Returns the contents of the collection in
-     * an Array.  <p>Note:  Just in case the collection contents
-     * are changing in another thread, we pass a 0-length Array of
-     * the correct type into the API call.  This way we <i>know</i>
-     * that the Array returned is of exactly the correct length.
-     * 
-     * @return this collection as an Array
-     */
-    public jalview.schemabinding.version2.Property[] getProperty(
-    ) {
-        jalview.schemabinding.version2.Property[] array = new jalview.schemabinding.version2.Property[0];
-        return (jalview.schemabinding.version2.Property[]) this._propertyList.toArray(array);
-    }
-
-    /**
-     * Method getPropertyCount.
-     * 
-     * @return the size of this collection
-     */
-    public int getPropertyCount(
-    ) {
-        return this._propertyList.size();
-    }
-
-    /**
-     */
-    public void removeAllProperty(
-    ) {
-        this._propertyList.clear();
-    }
-
-    /**
-     * Method removeProperty.
-     * 
-     * @param vProperty
-     * @return true if the object was removed from the collection.
-     */
-    public boolean removeProperty(
-            final jalview.schemabinding.version2.Property vProperty) {
-        boolean removed = _propertyList.remove(vProperty);
-        return removed;
-    }
-
-    /**
-     * Method removePropertyAt.
-     * 
-     * @param index
-     * @return the element removed from the collection
-     */
-    public jalview.schemabinding.version2.Property removePropertyAt(
-            final int index) {
-        java.lang.Object obj = this._propertyList.remove(index);
-        return (jalview.schemabinding.version2.Property) obj;
-    }
-
-    /**
-     * 
-     * 
-     * @param index
-     * @param vProperty
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     */
-    public void setProperty(
-            final int index,
-            final jalview.schemabinding.version2.Property vProperty)
-    throws java.lang.IndexOutOfBoundsException {
-        // check bounds for index
-        if (index < 0 || index >= this._propertyList.size()) {
-            throw new IndexOutOfBoundsException("setProperty: Index value '" + index + "' not in range [0.." + (this._propertyList.size() - 1) + "]");
-        }
-        
-        this._propertyList.set(index, vProperty);
-    }
-
-    /**
-     * 
-     * 
-     * @param vPropertyArray
-     */
-    public void setProperty(
-            final jalview.schemabinding.version2.Property[] vPropertyArray) {
-        //-- copy array
-        _propertyList.clear();
-        
-        for (int i = 0; i < vPropertyArray.length; i++) {
-                this._propertyList.add(vPropertyArray[i]);
-        }
-    }
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.schemabinding.version2;
+
+/**
+ * Class PdbentryItem.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class PdbentryItem implements java.io.Serializable
+{
+
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
+
+  /**
+   * Field _propertyList.
+   */
+  private java.util.Vector _propertyList;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public PdbentryItem()
+  {
+    super();
+    this._propertyList = new java.util.Vector();
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
+   * 
+   * 
+   * @param vProperty
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void addProperty(
+          final jalview.schemabinding.version2.Property vProperty)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    this._propertyList.addElement(vProperty);
+  }
+
+  /**
+   * 
+   * 
+   * @param index
+   * @param vProperty
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void addProperty(final int index,
+          final jalview.schemabinding.version2.Property vProperty)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    this._propertyList.add(index, vProperty);
+  }
+
+  /**
+   * Method enumerateProperty.
+   * 
+   * @return an Enumeration over all jalview.schemabinding.version2.Property
+   *         elements
+   */
+  public java.util.Enumeration enumerateProperty()
+  {
+    return this._propertyList.elements();
+  }
+
+  /**
+   * Method getProperty.
+   * 
+   * @param index
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   * @return the value of the jalview.schemabinding.version2.Property at the
+   *         given index
+   */
+  public jalview.schemabinding.version2.Property getProperty(final int index)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check bounds for index
+    if (index < 0 || index >= this._propertyList.size())
+    {
+      throw new IndexOutOfBoundsException("getProperty: Index value '"
+              + index + "' not in range [0.."
+              + (this._propertyList.size() - 1) + "]");
+    }
+
+    return (jalview.schemabinding.version2.Property) _propertyList
+            .get(index);
+  }
+
+  /**
+   * Method getProperty.Returns the contents of the collection in an Array.
+   * <p>
+   * Note: Just in case the collection contents are changing in another thread,
+   * we pass a 0-length Array of the correct type into the API call. This way we
+   * <i>know</i> that the Array returned is of exactly the correct length.
+   * 
+   * @return this collection as an Array
+   */
+  public jalview.schemabinding.version2.Property[] getProperty()
+  {
+    jalview.schemabinding.version2.Property[] array = new jalview.schemabinding.version2.Property[0];
+    return (jalview.schemabinding.version2.Property[]) this._propertyList
+            .toArray(array);
+  }
+
+  /**
+   * Method getPropertyCount.
+   * 
+   * @return the size of this collection
+   */
+  public int getPropertyCount()
+  {
+    return this._propertyList.size();
+  }
+
+  /**
+     */
+  public void removeAllProperty()
+  {
+    this._propertyList.clear();
+  }
+
+  /**
+   * Method removeProperty.
+   * 
+   * @param vProperty
+   * @return true if the object was removed from the collection.
+   */
+  public boolean removeProperty(
+          final jalview.schemabinding.version2.Property vProperty)
+  {
+    boolean removed = _propertyList.remove(vProperty);
+    return removed;
+  }
+
+  /**
+   * Method removePropertyAt.
+   * 
+   * @param index
+   * @return the element removed from the collection
+   */
+  public jalview.schemabinding.version2.Property removePropertyAt(
+          final int index)
+  {
+    java.lang.Object obj = this._propertyList.remove(index);
+    return (jalview.schemabinding.version2.Property) obj;
+  }
+
+  /**
+   * 
+   * 
+   * @param index
+   * @param vProperty
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void setProperty(final int index,
+          final jalview.schemabinding.version2.Property vProperty)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check bounds for index
+    if (index < 0 || index >= this._propertyList.size())
+    {
+      throw new IndexOutOfBoundsException("setProperty: Index value '"
+              + index + "' not in range [0.."
+              + (this._propertyList.size() - 1) + "]");
+    }
+
+    this._propertyList.set(index, vProperty);
+  }
+
+  /**
+   * 
+   * 
+   * @param vPropertyArray
+   */
+  public void setProperty(
+          final jalview.schemabinding.version2.Property[] vPropertyArray)
+  {
+    // -- copy array
+    _propertyList.clear();
+
+    for (int i = 0; i < vPropertyArray.length; i++)
+    {
+      this._propertyList.add(vPropertyArray[i]);
+    }
+  }
+
+}