X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FPdbentryItem.java;h=aa7078a17c9e6ac9e406a3b23d44de5ab3bb98e5;hb=ad15cff29620f960119f80176f1fd443da9f6763;hp=7e3d8a84dab8c7a88db4b4d98f49998d5dd55fcf;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/PdbentryItem.java b/src/jalview/schemabinding/version2/PdbentryItem.java
old mode 100755
new mode 100644
index 7e3d8a8..aa7078a
--- a/src/jalview/schemabinding/version2/PdbentryItem.java
+++ b/src/jalview/schemabinding/version2/PdbentryItem.java
@@ -1,214 +1,223 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- */
-package jalview.schemabinding.version2;
-
-/**
- * Class PdbentryItem.
- * 
- * @version $Revision$ $Date$
- */
-public class PdbentryItem implements java.io.Serializable
-{
-
-  // --------------------------/
-  // - Class/Member Variables -/
-  // --------------------------/
-
-  /**
-   * Field _propertyList.
-   */
-  private java.util.Vector _propertyList;
-
-  // ----------------/
-  // - Constructors -/
-  // ----------------/
-
-  public PdbentryItem()
-  {
-    super();
-    this._propertyList = new java.util.Vector();
-  }
-
-  // -----------/
-  // - Methods -/
-  // -----------/
-
-  /**
-   * 
-   * 
-   * @param vProperty
-   * @throws java.lang.IndexOutOfBoundsException
-   *           if the index given is outside the bounds of the collection
-   */
-  public void addProperty(
-          final jalview.schemabinding.version2.Property vProperty)
-          throws java.lang.IndexOutOfBoundsException
-  {
-    this._propertyList.addElement(vProperty);
-  }
-
-  /**
-   * 
-   * 
-   * @param index
-   * @param vProperty
-   * @throws java.lang.IndexOutOfBoundsException
-   *           if the index given is outside the bounds of the collection
-   */
-  public void addProperty(final int index,
-          final jalview.schemabinding.version2.Property vProperty)
-          throws java.lang.IndexOutOfBoundsException
-  {
-    this._propertyList.add(index, vProperty);
-  }
-
-  /**
-   * Method enumerateProperty.
-   * 
-   * @return an Enumeration over all jalview.schemabinding.version2.Property
-   *         elements
-   */
-  public java.util.Enumeration enumerateProperty()
-  {
-    return this._propertyList.elements();
-  }
-
-  /**
-   * Method getProperty.
-   * 
-   * @param index
-   * @throws java.lang.IndexOutOfBoundsException
-   *           if the index given is outside the bounds of the collection
-   * @return the value of the jalview.schemabinding.version2.Property at the
-   *         given index
-   */
-  public jalview.schemabinding.version2.Property getProperty(final int index)
-          throws java.lang.IndexOutOfBoundsException
-  {
-    // check bounds for index
-    if (index < 0 || index >= this._propertyList.size())
-    {
-      throw new IndexOutOfBoundsException("getProperty: Index value '"
-              + index + "' not in range [0.."
-              + (this._propertyList.size() - 1) + "]");
-    }
-
-    return (jalview.schemabinding.version2.Property) _propertyList
-            .get(index);
-  }
-
-  /**
-   * Method getProperty.Returns the contents of the collection in an Array.
-   * <p>
-   * Note: Just in case the collection contents are changing in another thread,
-   * we pass a 0-length Array of the correct type into the API call. This way we
-   * <i>know</i> that the Array returned is of exactly the correct length.
-   * 
-   * @return this collection as an Array
-   */
-  public jalview.schemabinding.version2.Property[] getProperty()
-  {
-    jalview.schemabinding.version2.Property[] array = new jalview.schemabinding.version2.Property[0];
-    return (jalview.schemabinding.version2.Property[]) this._propertyList
-            .toArray(array);
-  }
-
-  /**
-   * Method getPropertyCount.
-   * 
-   * @return the size of this collection
-   */
-  public int getPropertyCount()
-  {
-    return this._propertyList.size();
-  }
-
-  /**
-     */
-  public void removeAllProperty()
-  {
-    this._propertyList.clear();
-  }
-
-  /**
-   * Method removeProperty.
-   * 
-   * @param vProperty
-   * @return true if the object was removed from the collection.
-   */
-  public boolean removeProperty(
-          final jalview.schemabinding.version2.Property vProperty)
-  {
-    boolean removed = _propertyList.remove(vProperty);
-    return removed;
-  }
-
-  /**
-   * Method removePropertyAt.
-   * 
-   * @param index
-   * @return the element removed from the collection
-   */
-  public jalview.schemabinding.version2.Property removePropertyAt(
-          final int index)
-  {
-    java.lang.Object obj = this._propertyList.remove(index);
-    return (jalview.schemabinding.version2.Property) obj;
-  }
-
-  /**
-   * 
-   * 
-   * @param index
-   * @param vProperty
-   * @throws java.lang.IndexOutOfBoundsException
-   *           if the index given is outside the bounds of the collection
-   */
-  public void setProperty(final int index,
-          final jalview.schemabinding.version2.Property vProperty)
-          throws java.lang.IndexOutOfBoundsException
-  {
-    // check bounds for index
-    if (index < 0 || index >= this._propertyList.size())
-    {
-      throw new IndexOutOfBoundsException("setProperty: Index value '"
-              + index + "' not in range [0.."
-              + (this._propertyList.size() - 1) + "]");
-    }
-
-    this._propertyList.set(index, vProperty);
-  }
-
-  /**
-   * 
-   * 
-   * @param vPropertyArray
-   */
-  public void setProperty(
-          final jalview.schemabinding.version2.Property[] vPropertyArray)
-  {
-    // -- copy array
-    _propertyList.clear();
-
-    for (int i = 0; i < vPropertyArray.length; i++)
-    {
-      this._propertyList.add(vPropertyArray[i]);
-    }
-  }
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.schemabinding.version2;
+
+import jalview.util.MessageManager;
+
+/**
+ * Class PdbentryItem.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class PdbentryItem implements java.io.Serializable
+{
+
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
+
+  /**
+   * Field _propertyList.
+   */
+  private java.util.Vector _propertyList;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public PdbentryItem()
+  {
+    super();
+    this._propertyList = new java.util.Vector();
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
+   * 
+   * 
+   * @param vProperty
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void addProperty(
+          final jalview.schemabinding.version2.Property vProperty)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    this._propertyList.addElement(vProperty);
+  }
+
+  /**
+   * 
+   * 
+   * @param index
+   * @param vProperty
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void addProperty(final int index,
+          final jalview.schemabinding.version2.Property vProperty)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    this._propertyList.add(index, vProperty);
+  }
+
+  /**
+   * Method enumerateProperty.
+   * 
+   * @return an Enumeration over all jalview.schemabinding.version2.Property
+   *         elements
+   */
+  public java.util.Enumeration enumerateProperty()
+  {
+    return this._propertyList.elements();
+  }
+
+  /**
+   * Method getProperty.
+   * 
+   * @param index
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   * @return the value of the jalview.schemabinding.version2.Property at the
+   *         given index
+   */
+  public jalview.schemabinding.version2.Property getProperty(final int index)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check bounds for index
+    if (index < 0 || index >= this._propertyList.size())
+    {
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+        		  "getProperty",
+        		  Integer.valueOf(index).toString(),
+        		  Integer.valueOf((this._propertyList.size() - 1)).toString()
+          })); 
+    }
+
+    return (jalview.schemabinding.version2.Property) _propertyList
+            .get(index);
+  }
+
+  /**
+   * Method getProperty.Returns the contents of the collection in an Array.
+   * <p>
+   * Note: Just in case the collection contents are changing in another thread,
+   * we pass a 0-length Array of the correct type into the API call. This way we
+   * <i>know</i> that the Array returned is of exactly the correct length.
+   * 
+   * @return this collection as an Array
+   */
+  public jalview.schemabinding.version2.Property[] getProperty()
+  {
+    jalview.schemabinding.version2.Property[] array = new jalview.schemabinding.version2.Property[0];
+    return (jalview.schemabinding.version2.Property[]) this._propertyList
+            .toArray(array);
+  }
+
+  /**
+   * Method getPropertyCount.
+   * 
+   * @return the size of this collection
+   */
+  public int getPropertyCount()
+  {
+    return this._propertyList.size();
+  }
+
+  /**
+     */
+  public void removeAllProperty()
+  {
+    this._propertyList.clear();
+  }
+
+  /**
+   * Method removeProperty.
+   * 
+   * @param vProperty
+   * @return true if the object was removed from the collection.
+   */
+  public boolean removeProperty(
+          final jalview.schemabinding.version2.Property vProperty)
+  {
+    boolean removed = _propertyList.remove(vProperty);
+    return removed;
+  }
+
+  /**
+   * Method removePropertyAt.
+   * 
+   * @param index
+   * @return the element removed from the collection
+   */
+  public jalview.schemabinding.version2.Property removePropertyAt(
+          final int index)
+  {
+    java.lang.Object obj = this._propertyList.remove(index);
+    return (jalview.schemabinding.version2.Property) obj;
+  }
+
+  /**
+   * 
+   * 
+   * @param index
+   * @param vProperty
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void setProperty(final int index,
+          final jalview.schemabinding.version2.Property vProperty)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check bounds for index
+    if (index < 0 || index >= this._propertyList.size())
+    {
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+      		  "setProperty",
+      		  Integer.valueOf(index).toString(),
+      		  Integer.valueOf((this._propertyList.size() - 1)).toString()
+        })); 
+    }
+
+    this._propertyList.set(index, vProperty);
+  }
+
+  /**
+   * 
+   * 
+   * @param vPropertyArray
+   */
+  public void setProperty(
+          final jalview.schemabinding.version2.Property[] vPropertyArray)
+  {
+    // -- copy array
+    _propertyList.clear();
+
+    for (int i = 0; i < vPropertyArray.length; i++)
+    {
+      this._propertyList.add(vPropertyArray[i]);
+    }
+  }
+
+}