X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FPdbids.java;fp=src%2Fjalview%2Fschemabinding%2Fversion2%2FPdbids.java;h=0000000000000000000000000000000000000000;hb=ca8504cf9d10874dce9f07cf7a9d933853fe0dd0;hp=978df5b3fdf075ee6183373e43cc7177944bd84d;hpb=775e7bc104584e88dddcea73fbf02c66f5200c16;p=jalview.git diff --git a/src/jalview/schemabinding/version2/Pdbids.java b/src/jalview/schemabinding/version2/Pdbids.java deleted file mode 100644 index 978df5b..0000000 --- a/src/jalview/schemabinding/version2/Pdbids.java +++ /dev/null @@ -1,303 +0,0 @@ -/* - * This class was automatically generated with - * Castor 1.1, using an XML - * Schema. - * $Id$ - */ - -package jalview.schemabinding.version2; - -//---------------------------------/ -//- Imported classes and packages -/ -//---------------------------------/ - -import org.exolab.castor.xml.Marshaller; -import org.exolab.castor.xml.Unmarshaller; - -/** - * Class Pdbids. - * - * @version $Revision$ $Date$ - */ -public class Pdbids extends jalview.schemabinding.version2.Pdbentry - implements java.io.Serializable -{ - - // --------------------------/ - // - Class/Member Variables -/ - // --------------------------/ - - /** - * Field _structureStateList. - */ - private java.util.Vector _structureStateList; - - // ----------------/ - // - Constructors -/ - // ----------------/ - - public Pdbids() - { - super(); - this._structureStateList = new java.util.Vector(); - } - - // -----------/ - // - Methods -/ - // -----------/ - - /** - * - * - * @param vStructureState - * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection - */ - public void addStructureState( - final jalview.schemabinding.version2.StructureState vStructureState) - throws java.lang.IndexOutOfBoundsException - { - this._structureStateList.addElement(vStructureState); - } - - /** - * - * - * @param index - * @param vStructureState - * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection - */ - public void addStructureState( - final int index, - final jalview.schemabinding.version2.StructureState vStructureState) - throws java.lang.IndexOutOfBoundsException - { - this._structureStateList.add(index, vStructureState); - } - - /** - * Method enumerateStructureState. - * - * @return an Enumeration over all - * jalview.schemabinding.version2.StructureState elements - */ - public java.util.Enumeration enumerateStructureState() - { - return this._structureStateList.elements(); - } - - /** - * Method getStructureState. - * - * @param index - * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection - * @return the value of the jalview.schemabinding.version2.StructureState at - * the given index - */ - public jalview.schemabinding.version2.StructureState getStructureState( - final int index) throws java.lang.IndexOutOfBoundsException - { - // check bounds for index - if (index < 0 || index >= this._structureStateList.size()) - { - throw new IndexOutOfBoundsException( - "getStructureState: Index value '" + index - + "' not in range [0.." - + (this._structureStateList.size() - 1) + "]"); - } - - return (jalview.schemabinding.version2.StructureState) _structureStateList - .get(index); - } - - /** - * Method getStructureState.Returns the contents of the collection in an - * Array. - *

- * Note: Just in case the collection contents are changing in another thread, - * we pass a 0-length Array of the correct type into the API call. This way we - * know that the Array returned is of exactly the correct length. - * - * @return this collection as an Array - */ - public jalview.schemabinding.version2.StructureState[] getStructureState() - { - jalview.schemabinding.version2.StructureState[] array = new jalview.schemabinding.version2.StructureState[0]; - return (jalview.schemabinding.version2.StructureState[]) this._structureStateList - .toArray(array); - } - - /** - * Method getStructureStateCount. - * - * @return the size of this collection - */ - public int getStructureStateCount() - { - return this._structureStateList.size(); - } - - /** - * Method isValid. - * - * @return true if this object is valid according to the schema - */ - public boolean isValid() - { - try - { - validate(); - } catch (org.exolab.castor.xml.ValidationException vex) - { - return false; - } - return true; - } - - /** - * - * - * @param out - * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - */ - public void marshal(final java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - Marshaller.marshal(this, out); - } - - /** - * - * - * @param handler - * @throws java.io.IOException - * if an IOException occurs during marshaling - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling - */ - public void marshal(final org.xml.sax.ContentHandler handler) - throws java.io.IOException, - org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - Marshaller.marshal(this, handler); - } - - /** - */ - public void removeAllStructureState() - { - this._structureStateList.clear(); - } - - /** - * Method removeStructureState. - * - * @param vStructureState - * @return true if the object was removed from the collection. - */ - public boolean removeStructureState( - final jalview.schemabinding.version2.StructureState vStructureState) - { - boolean removed = _structureStateList.remove(vStructureState); - return removed; - } - - /** - * Method removeStructureStateAt. - * - * @param index - * @return the element removed from the collection - */ - public jalview.schemabinding.version2.StructureState removeStructureStateAt( - final int index) - { - java.lang.Object obj = this._structureStateList.remove(index); - return (jalview.schemabinding.version2.StructureState) obj; - } - - /** - * - * - * @param index - * @param vStructureState - * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection - */ - public void setStructureState( - final int index, - final jalview.schemabinding.version2.StructureState vStructureState) - throws java.lang.IndexOutOfBoundsException - { - // check bounds for index - if (index < 0 || index >= this._structureStateList.size()) - { - throw new IndexOutOfBoundsException( - "setStructureState: Index value '" + index - + "' not in range [0.." - + (this._structureStateList.size() - 1) + "]"); - } - - this._structureStateList.set(index, vStructureState); - } - - /** - * - * - * @param vStructureStateArray - */ - public void setStructureState( - final jalview.schemabinding.version2.StructureState[] vStructureStateArray) - { - // -- copy array - _structureStateList.clear(); - - for (int i = 0; i < vStructureStateArray.length; i++) - { - this._structureStateList.add(vStructureStateArray[i]); - } - } - - /** - * Method unmarshal. - * - * @param reader - * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - * @return the unmarshaled jalview.schemabinding.version2.Pdbentry - */ - public static jalview.schemabinding.version2.Pdbentry unmarshal( - final java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - return (jalview.schemabinding.version2.Pdbentry) Unmarshaller - .unmarshal(jalview.schemabinding.version2.Pdbids.class, reader); - } - - /** - * - * - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - */ - public void validate() throws org.exolab.castor.xml.ValidationException - { - org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); - validator.validate(this); - } - -}