Note: Just in case the - * collection contents are changing in another thread, we pass - * a 0-length Array of the correct type into the API call. - * This way we know that the Array returned is of - * exactly the correct length. - * - * @return this collection as an Array - */ - public jalview.schemabinding.version2.StructureState[] getStructureState( - ) { - jalview.schemabinding.version2.StructureState[] array = new jalview.schemabinding.version2.StructureState[0]; - return (jalview.schemabinding.version2.StructureState[]) this._structureStateList.toArray(array); - } - - /** - * Method getStructureStateCount. - * - * @return the size of this collection - */ - public int getStructureStateCount( - ) { - return this._structureStateList.size(); - } - - /** - * Method isValid. - * - * @return true if this object is valid according to the schema - */ - public boolean isValid( - ) { - try { - validate(); - } catch (org.exolab.castor.xml.ValidationException vex) { - return false; - } - return true; - } - - /** - * - * - * @param out - * @throws org.exolab.castor.xml.MarshalException if object is - * null or if any SAXException is thrown during marshaling - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - */ - public void marshal( - final java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - Marshaller.marshal(this, out); - } - - /** - * - * - * @param handler - * @throws java.io.IOException if an IOException occurs during - * marshaling - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - * @throws org.exolab.castor.xml.MarshalException if object is - * null or if any SAXException is thrown during marshaling - */ - public void marshal( - final org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - Marshaller.marshal(this, handler); - } - - /** - */ - public void removeAllStructureState( - ) { - this._structureStateList.clear(); - } - - /** - * Method removeStructureState. - * - * @param vStructureState - * @return true if the object was removed from the collection. - */ - public boolean removeStructureState( - final jalview.schemabinding.version2.StructureState vStructureState) { - boolean removed = _structureStateList.remove(vStructureState); - return removed; - } - - /** - * Method removeStructureStateAt. - * - * @param index - * @return the element removed from the collection - */ - public jalview.schemabinding.version2.StructureState removeStructureStateAt( - final int index) { - java.lang.Object obj = this._structureStateList.remove(index); - return (jalview.schemabinding.version2.StructureState) obj; - } - - /** - * - * - * @param index - * @param vStructureState - * @throws java.lang.IndexOutOfBoundsException if the index - * given is outside the bounds of the collection - */ - public void setStructureState( - final int index, - final jalview.schemabinding.version2.StructureState vStructureState) - throws java.lang.IndexOutOfBoundsException { - // check bounds for index - if (index < 0 || index >= this._structureStateList.size()) { - throw new IndexOutOfBoundsException("setStructureState: Index value '" + index + "' not in range [0.." + (this._structureStateList.size() - 1) + "]"); - } - - this._structureStateList.set(index, vStructureState); - } - - /** - * - * - * @param vStructureStateArray - */ - public void setStructureState( - final jalview.schemabinding.version2.StructureState[] vStructureStateArray) { - //-- copy array - _structureStateList.clear(); - - for (int i = 0; i < vStructureStateArray.length; i++) { - this._structureStateList.add(vStructureStateArray[i]); - } - } - - /** - * Method unmarshal. - * - * @param reader - * @throws org.exolab.castor.xml.MarshalException if object is - * null or if any SAXException is thrown during marshaling - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - * @return the unmarshaled - * jalview.schemabinding.version2.Pdbentry - */ - public static jalview.schemabinding.version2.Pdbentry unmarshal( - final java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - return (jalview.schemabinding.version2.Pdbentry) Unmarshaller.unmarshal(jalview.schemabinding.version2.Pdbids.class, reader); - } - - /** - * - * - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - */ - public void validate( - ) - throws org.exolab.castor.xml.ValidationException { - org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); - validator.validate(this); - } - -} +/* + * This class was automatically generated with + * Castor 1.1, using an XML + * Schema. + * $Id$ + */ + +package jalview.schemabinding.version2; + + //---------------------------------/ + //- Imported classes and packages -/ +//---------------------------------/ + +import org.exolab.castor.xml.Marshaller; +import org.exolab.castor.xml.Unmarshaller; + +/** + * Class Pdbids. + * + * @version $Revision$ $Date$ + */ +public class Pdbids extends jalview.schemabinding.version2.Pdbentry +implements java.io.Serializable +{ + + + //--------------------------/ + //- Class/Member Variables -/ + //--------------------------/ + + /** + * Field _structureStateList. + */ + private java.util.Vector _structureStateList; + + + //----------------/ + //- Constructors -/ + //----------------/ + + public Pdbids() { + super(); + this._structureStateList = new java.util.Vector(); + } + + + //-----------/ + //- Methods -/ + //-----------/ + + /** + * + * + * @param vStructureState + * @throws java.lang.IndexOutOfBoundsException if the index + * given is outside the bounds of the collection + */ + public void addStructureState( + final jalview.schemabinding.version2.StructureState vStructureState) + throws java.lang.IndexOutOfBoundsException { + this._structureStateList.addElement(vStructureState); + } + + /** + * + * + * @param index + * @param vStructureState + * @throws java.lang.IndexOutOfBoundsException if the index + * given is outside the bounds of the collection + */ + public void addStructureState( + final int index, + final jalview.schemabinding.version2.StructureState vStructureState) + throws java.lang.IndexOutOfBoundsException { + this._structureStateList.add(index, vStructureState); + } + + /** + * Method enumerateStructureState. + * + * @return an Enumeration over all + * jalview.schemabinding.version2.StructureState elements + */ + public java.util.Enumeration enumerateStructureState( + ) { + return this._structureStateList.elements(); + } + + /** + * Method getStructureState. + * + * @param index + * @throws java.lang.IndexOutOfBoundsException if the index + * given is outside the bounds of the collection + * @return the value of the + * jalview.schemabinding.version2.StructureState at the given + * index + */ + public jalview.schemabinding.version2.StructureState getStructureState( + final int index) + throws java.lang.IndexOutOfBoundsException { + // check bounds for index + if (index < 0 || index >= this._structureStateList.size()) { + throw new IndexOutOfBoundsException("getStructureState: Index value '" + index + "' not in range [0.." + (this._structureStateList.size() - 1) + "]"); + } + + return (jalview.schemabinding.version2.StructureState) _structureStateList.get(index); + } + + /** + * Method getStructureState.Returns the contents of the + * collection in an Array.
Note: Just in case the + * collection contents are changing in another thread, we pass + * a 0-length Array of the correct type into the API call. + * This way we know that the Array returned is of + * exactly the correct length. + * + * @return this collection as an Array + */ + public jalview.schemabinding.version2.StructureState[] getStructureState( + ) { + jalview.schemabinding.version2.StructureState[] array = new jalview.schemabinding.version2.StructureState[0]; + return (jalview.schemabinding.version2.StructureState[]) this._structureStateList.toArray(array); + } + + /** + * Method getStructureStateCount. + * + * @return the size of this collection + */ + public int getStructureStateCount( + ) { + return this._structureStateList.size(); + } + + /** + * Method isValid. + * + * @return true if this object is valid according to the schema + */ + public boolean isValid( + ) { + try { + validate(); + } catch (org.exolab.castor.xml.ValidationException vex) { + return false; + } + return true; + } + + /** + * + * + * @param out + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + */ + public void marshal( + final java.io.Writer out) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, out); + } + + /** + * + * + * @param handler + * @throws java.io.IOException if an IOException occurs during + * marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + */ + public void marshal( + final org.xml.sax.ContentHandler handler) + throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, handler); + } + + /** + */ + public void removeAllStructureState( + ) { + this._structureStateList.clear(); + } + + /** + * Method removeStructureState. + * + * @param vStructureState + * @return true if the object was removed from the collection. + */ + public boolean removeStructureState( + final jalview.schemabinding.version2.StructureState vStructureState) { + boolean removed = _structureStateList.remove(vStructureState); + return removed; + } + + /** + * Method removeStructureStateAt. + * + * @param index + * @return the element removed from the collection + */ + public jalview.schemabinding.version2.StructureState removeStructureStateAt( + final int index) { + java.lang.Object obj = this._structureStateList.remove(index); + return (jalview.schemabinding.version2.StructureState) obj; + } + + /** + * + * + * @param index + * @param vStructureState + * @throws java.lang.IndexOutOfBoundsException if the index + * given is outside the bounds of the collection + */ + public void setStructureState( + final int index, + final jalview.schemabinding.version2.StructureState vStructureState) + throws java.lang.IndexOutOfBoundsException { + // check bounds for index + if (index < 0 || index >= this._structureStateList.size()) { + throw new IndexOutOfBoundsException("setStructureState: Index value '" + index + "' not in range [0.." + (this._structureStateList.size() - 1) + "]"); + } + + this._structureStateList.set(index, vStructureState); + } + + /** + * + * + * @param vStructureStateArray + */ + public void setStructureState( + final jalview.schemabinding.version2.StructureState[] vStructureStateArray) { + //-- copy array + _structureStateList.clear(); + + for (int i = 0; i < vStructureStateArray.length; i++) { + this._structureStateList.add(vStructureStateArray[i]); + } + } + + /** + * Method unmarshal. + * + * @param reader + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + * @return the unmarshaled + * jalview.schemabinding.version2.Pdbentry + */ + public static jalview.schemabinding.version2.Pdbentry unmarshal( + final java.io.Reader reader) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + return (jalview.schemabinding.version2.Pdbentry) Unmarshaller.unmarshal(jalview.schemabinding.version2.Pdbids.class, reader); + } + + /** + * + * + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + */ + public void validate( + ) + throws org.exolab.castor.xml.ValidationException { + org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); + validator.validate(this); + } + +}