X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FSequence.java;h=372a2c564c2155544387190b74448117254802cb;hb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;hp=993ad23609b227ec32ae07d817e49cd2abed549c;hpb=374d49bb6bd6bb285f7e49560e2bcb8004ff4af3;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/Sequence.java b/src/jalview/schemabinding/version2/Sequence.java
index 993ad23..372a2c5 100755
--- a/src/jalview/schemabinding/version2/Sequence.java
+++ b/src/jalview/schemabinding/version2/Sequence.java
@@ -1,5 +1,5 @@
 /*
- * This class was automatically generated with 
+ * This class was automatically generated with
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
  * Schema.
  * $Id$
@@ -7,270 +7,274 @@
 
 package jalview.schemabinding.version2;
 
-  //---------------------------------/
- //- Imported classes and packages -/
 //---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import java.util.*;
 
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
-import java.util.Enumeration;
-import java.util.Vector;
-import org.exolab.castor.xml.MarshalException;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-import org.xml.sax.ContentHandler;
+import org.exolab.castor.xml.*;
 
 /**
  * Class Sequence.
- * 
+ *
  * @version $Revision$ $Date$
  */
-public class Sequence extends jalview.schemabinding.version2.SequenceType 
-implements java.io.Serializable
+public class Sequence
+    extends jalview.schemabinding.version2.SequenceType implements java.io.
+    Serializable
 {
 
+  //--------------------------/
+  //- Class/Member Variables -/
+  //--------------------------/
 
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
+  /**
+   * Field _DBRefList
+   */
+  private java.util.Vector _DBRefList;
 
-    /**
-     * Field _DBRefList
-     */
-    private java.util.Vector _DBRefList;
+  //----------------/
+  //- Constructors -/
+  //----------------/
 
+  public Sequence()
+  {
+    super();
+    _DBRefList = new Vector();
+  } //-- jalview.schemabinding.version2.Sequence()
 
-      //----------------/
-     //- Constructors -/
-    //----------------/
+  //-----------/
+  //- Methods -/
+  //-----------/
 
-    public Sequence() {
-        super();
-        _DBRefList = new Vector();
-    } //-- jalview.schemabinding.version2.Sequence()
+  /**
+   * Method addDBRef
+   *
+   *
+   *
+   * @param vDBRef
+   */
+  public void addDBRef(jalview.schemabinding.version2.DBRef vDBRef)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    _DBRefList.addElement(vDBRef);
+  } //-- void addDBRef(jalview.schemabinding.version2.DBRef)
 
+  /**
+   * Method addDBRef
+   *
+   *
+   *
+   * @param index
+   * @param vDBRef
+   */
+  public void addDBRef(int index, jalview.schemabinding.version2.DBRef vDBRef)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    _DBRefList.insertElementAt(vDBRef, index);
+  } //-- void addDBRef(int, jalview.schemabinding.version2.DBRef)
 
-      //-----------/
-     //- Methods -/
-    //-----------/
+  /**
+   * Method enumerateDBRef
+   *
+   *
+   *
+   * @return Enumeration
+   */
+  public java.util.Enumeration enumerateDBRef()
+  {
+    return _DBRefList.elements();
+  } //-- java.util.Enumeration enumerateDBRef()
 
-    /**
-     * Method addDBRef
-     * 
-     * 
-     * 
-     * @param vDBRef
-     */
-    public void addDBRef(jalview.schemabinding.version2.DBRef vDBRef)
-        throws java.lang.IndexOutOfBoundsException
+  /**
+   * Method getDBRef
+   *
+   *
+   *
+   * @param index
+   * @return DBRef
+   */
+  public jalview.schemabinding.version2.DBRef getDBRef(int index)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    //-- check bounds for index
+    if ( (index < 0) || (index > _DBRefList.size()))
     {
-        _DBRefList.addElement(vDBRef);
-    } //-- void addDBRef(jalview.schemabinding.version2.DBRef) 
+      throw new IndexOutOfBoundsException();
+    }
 
-    /**
-     * Method addDBRef
-     * 
-     * 
-     * 
-     * @param index
-     * @param vDBRef
-     */
-    public void addDBRef(int index, jalview.schemabinding.version2.DBRef vDBRef)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        _DBRefList.insertElementAt(vDBRef, index);
-    } //-- void addDBRef(int, jalview.schemabinding.version2.DBRef) 
+    return (jalview.schemabinding.version2.DBRef) _DBRefList.elementAt(index);
+  } //-- jalview.schemabinding.version2.DBRef getDBRef(int)
 
-    /**
-     * Method enumerateDBRef
-     * 
-     * 
-     * 
-     * @return Enumeration
-     */
-    public java.util.Enumeration enumerateDBRef()
+  /**
+   * Method getDBRef
+   *
+   *
+   *
+   * @return DBRef
+   */
+  public jalview.schemabinding.version2.DBRef[] getDBRef()
+  {
+    int size = _DBRefList.size();
+    jalview.schemabinding.version2.DBRef[] mArray = new jalview.schemabinding.
+        version2.DBRef[size];
+    for (int index = 0; index < size; index++)
     {
-        return _DBRefList.elements();
-    } //-- java.util.Enumeration enumerateDBRef() 
+      mArray[index] = (jalview.schemabinding.version2.DBRef) _DBRefList.
+          elementAt(index);
+    }
+    return mArray;
+  } //-- jalview.schemabinding.version2.DBRef[] getDBRef()
 
-    /**
-     * Method getDBRef
-     * 
-     * 
-     * 
-     * @param index
-     * @return DBRef
-     */
-    public jalview.schemabinding.version2.DBRef getDBRef(int index)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        //-- check bounds for index
-        if ((index < 0) || (index > _DBRefList.size())) {
-            throw new IndexOutOfBoundsException();
-        }
-        
-        return (jalview.schemabinding.version2.DBRef) _DBRefList.elementAt(index);
-    } //-- jalview.schemabinding.version2.DBRef getDBRef(int) 
+  /**
+   * Method getDBRefCount
+   *
+   *
+   *
+   * @return int
+   */
+  public int getDBRefCount()
+  {
+    return _DBRefList.size();
+  } //-- int getDBRefCount()
 
-    /**
-     * Method getDBRef
-     * 
-     * 
-     * 
-     * @return DBRef
-     */
-    public jalview.schemabinding.version2.DBRef[] getDBRef()
+  /**
+   * Method isValid
+   *
+   *
+   *
+   * @return boolean
+   */
+  public boolean isValid()
+  {
+    try
     {
-        int size = _DBRefList.size();
-        jalview.schemabinding.version2.DBRef[] mArray = new jalview.schemabinding.version2.DBRef[size];
-        for (int index = 0; index < size; index++) {
-            mArray[index] = (jalview.schemabinding.version2.DBRef) _DBRefList.elementAt(index);
-        }
-        return mArray;
-    } //-- jalview.schemabinding.version2.DBRef[] getDBRef() 
-
-    /**
-     * Method getDBRefCount
-     * 
-     * 
-     * 
-     * @return int
-     */
-    public int getDBRefCount()
+      validate();
+    }
+    catch (org.exolab.castor.xml.ValidationException vex)
     {
-        return _DBRefList.size();
-    } //-- int getDBRefCount() 
+      return false;
+    }
+    return true;
+  } //-- boolean isValid()
 
-    /**
-     * Method isValid
-     * 
-     * 
-     * 
-     * @return boolean
-     */
-    public boolean isValid()
-    {
-        try {
-            validate();
-        }
-        catch (org.exolab.castor.xml.ValidationException vex) {
-            return false;
-        }
-        return true;
-    } //-- boolean isValid() 
+  /**
+   * Method marshal
+   *
+   *
+   *
+   * @param out
+   */
+  public void marshal(java.io.Writer out)
+      throws org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
 
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param out
-     */
-    public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer) 
+    Marshaller.marshal(this, out);
+  } //-- void marshal(java.io.Writer)
 
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param handler
-     */
-    public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler) 
+  /**
+   * Method marshal
+   *
+   *
+   *
+   * @param handler
+   */
+  public void marshal(org.xml.sax.ContentHandler handler)
+      throws java.io.IOException, org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
 
-    /**
-     * Method removeAllDBRef
-     * 
-     */
-    public void removeAllDBRef()
-    {
-        _DBRefList.removeAllElements();
-    } //-- void removeAllDBRef() 
+    Marshaller.marshal(this, handler);
+  } //-- void marshal(org.xml.sax.ContentHandler)
 
-    /**
-     * Method removeDBRef
-     * 
-     * 
-     * 
-     * @param index
-     * @return DBRef
-     */
-    public jalview.schemabinding.version2.DBRef removeDBRef(int index)
-    {
-        java.lang.Object obj = _DBRefList.elementAt(index);
-        _DBRefList.removeElementAt(index);
-        return (jalview.schemabinding.version2.DBRef) obj;
-    } //-- jalview.schemabinding.version2.DBRef removeDBRef(int) 
+  /**
+   * Method removeAllDBRef
+   *
+   */
+  public void removeAllDBRef()
+  {
+    _DBRefList.removeAllElements();
+  } //-- void removeAllDBRef()
 
-    /**
-     * Method setDBRef
-     * 
-     * 
-     * 
-     * @param index
-     * @param vDBRef
-     */
-    public void setDBRef(int index, jalview.schemabinding.version2.DBRef vDBRef)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        //-- check bounds for index
-        if ((index < 0) || (index > _DBRefList.size())) {
-            throw new IndexOutOfBoundsException();
-        }
-        _DBRefList.setElementAt(vDBRef, index);
-    } //-- void setDBRef(int, jalview.schemabinding.version2.DBRef) 
+  /**
+   * Method removeDBRef
+   *
+   *
+   *
+   * @param index
+   * @return DBRef
+   */
+  public jalview.schemabinding.version2.DBRef removeDBRef(int index)
+  {
+    java.lang.Object obj = _DBRefList.elementAt(index);
+    _DBRefList.removeElementAt(index);
+    return (jalview.schemabinding.version2.DBRef) obj;
+  } //-- jalview.schemabinding.version2.DBRef removeDBRef(int)
 
-    /**
-     * Method setDBRef
-     * 
-     * 
-     * 
-     * @param DBRefArray
-     */
-    public void setDBRef(jalview.schemabinding.version2.DBRef[] DBRefArray)
+  /**
+   * Method setDBRef
+   *
+   *
+   *
+   * @param index
+   * @param vDBRef
+   */
+  public void setDBRef(int index, jalview.schemabinding.version2.DBRef vDBRef)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    //-- check bounds for index
+    if ( (index < 0) || (index > _DBRefList.size()))
     {
-        //-- copy array
-        _DBRefList.removeAllElements();
-        for (int i = 0; i < DBRefArray.length; i++) {
-            _DBRefList.addElement(DBRefArray[i]);
-        }
-    } //-- void setDBRef(jalview.schemabinding.version2.DBRef) 
+      throw new IndexOutOfBoundsException();
+    }
+    _DBRefList.setElementAt(vDBRef, index);
+  } //-- void setDBRef(int, jalview.schemabinding.version2.DBRef)
 
-    /**
-     * Method unmarshal
-     * 
-     * 
-     * 
-     * @param reader
-     * @return Object
-     */
-    public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+  /**
+   * Method setDBRef
+   *
+   *
+   *
+   * @param DBRefArray
+   */
+  public void setDBRef(jalview.schemabinding.version2.DBRef[] DBRefArray)
+  {
+    //-- copy array
+    _DBRefList.removeAllElements();
+    for (int i = 0; i < DBRefArray.length; i++)
     {
-        return (jalview.schemabinding.version2.Sequence) Unmarshaller.unmarshal(jalview.schemabinding.version2.Sequence.class, reader);
-    } //-- java.lang.Object unmarshal(java.io.Reader) 
+      _DBRefList.addElement(DBRefArray[i]);
+    }
+  } //-- void setDBRef(jalview.schemabinding.version2.DBRef)
 
-    /**
-     * Method validate
-     * 
-     */
-    public void validate()
-        throws org.exolab.castor.xml.ValidationException
-    {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
-    } //-- void validate() 
+  /**
+   * Method unmarshal
+   *
+   *
+   *
+   * @param reader
+   * @return Object
+   */
+  public static java.lang.Object unmarshal(java.io.Reader reader)
+      throws org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
+    return (jalview.schemabinding.version2.Sequence) Unmarshaller.unmarshal(
+        jalview.schemabinding.version2.Sequence.class, reader);
+  } //-- java.lang.Object unmarshal(java.io.Reader)
+
+  /**
+   * Method validate
+   *
+   */
+  public void validate()
+      throws org.exolab.castor.xml.ValidationException
+  {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.
+        Validator();
+    validator.validate(this);
+  } //-- void validate()
 
 }