X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FSequenceSet.java;h=8be802288a6b32b5f13f3b8114716239e1bf346b;hb=e42eed3a0089a8a064560df4cf17a5021fd1e16a;hp=e20bd57c938160678348713c0bb06ff10fc7f27d;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git
diff --git a/src/jalview/schemabinding/version2/SequenceSet.java b/src/jalview/schemabinding/version2/SequenceSet.java
index e20bd57..8be8022 100644
--- a/src/jalview/schemabinding/version2/SequenceSet.java
+++ b/src/jalview/schemabinding/version2/SequenceSet.java
@@ -1,31 +1,16 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see .
- * The Jalview Authors are detailed in the 'AUTHORS' file.
+ * This class was automatically generated with
+ * Castor 1.1, using an XML
+ * Schema.
+ * $Id$
*/
+
package jalview.schemabinding.version2;
//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
-import jalview.util.MessageManager;
-
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
@@ -266,11 +251,9 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._alcodonFrameList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getAlcodonFrame",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._alcodonFrameList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("getAlcodonFrame: Index value '"
+ + index + "' not in range [0.."
+ + (this._alcodonFrameList.size() - 1) + "]");
}
return (jalview.schemabinding.version2.AlcodonFrame) _alcodonFrameList
@@ -318,11 +301,9 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._annotationList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getAnnotation",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._alcodonFrameList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("getAnnotation: Index value '"
+ + index + "' not in range [0.."
+ + (this._annotationList.size() - 1) + "]");
}
return (jalview.schemabinding.version2.Annotation) _annotationList
@@ -393,11 +374,9 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getSequence",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._sequenceList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("getSequence: Index value '"
+ + index + "' not in range [0.."
+ + (this._sequenceList.size() - 1) + "]");
}
return (jalview.schemabinding.version2.Sequence) _sequenceList
@@ -446,11 +425,10 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceSetPropertiesList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getSequenceSetProperties",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._sequenceSetPropertiesList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException(
+ "getSequenceSetProperties: Index value '" + index
+ + "' not in range [0.."
+ + (this._sequenceSetPropertiesList.size() - 1) + "]");
}
return (jalview.schemabinding.version2.SequenceSetProperties) _sequenceSetPropertiesList
@@ -686,11 +664,9 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._alcodonFrameList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setAlcodonFrame",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._alcodonFrameList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("setAlcodonFrame: Index value '"
+ + index + "' not in range [0.."
+ + (this._alcodonFrameList.size() - 1) + "]");
}
this._alcodonFrameList.set(index, vAlcodonFrame);
@@ -728,11 +704,9 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._annotationList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setAnnotation",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._annotationList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("setAnnotation: Index value '"
+ + index + "' not in range [0.."
+ + (this._annotationList.size() - 1) + "]");
}
this._annotationList.set(index, vAnnotation);
@@ -795,11 +769,9 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setSequence",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._sequenceList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("setSequence: Index value '"
+ + index + "' not in range [0.."
+ + (this._sequenceList.size() - 1) + "]");
}
this._sequenceList.set(index, vSequence);
@@ -838,11 +810,10 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceSetPropertiesList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setSequenceSetProperties",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._sequenceSetPropertiesList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException(
+ "setSequenceSetProperties: Index value '" + index
+ + "' not in range [0.."
+ + (this._sequenceSetPropertiesList.size() - 1) + "]");
}
this._sequenceSetPropertiesList.set(index, vSequenceSetProperties);