X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FSequenceSet.java;h=d058ad50990d8476ea07ecdab2209c3a1bc0c088;hb=9493ac8f3b6a02d3cf9747ed6c0d6cf407d284e8;hp=568df1f43e1544c1bdd7ae0fcc24814a9b78c74c;hpb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;p=jalview.git
diff --git a/src/jalview/schemabinding/version2/SequenceSet.java b/src/jalview/schemabinding/version2/SequenceSet.java
index 568df1f..d058ad5 100644
--- a/src/jalview/schemabinding/version2/SequenceSet.java
+++ b/src/jalview/schemabinding/version2/SequenceSet.java
@@ -1,35 +1,31 @@
-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview.
- * If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
- ******************************************************************************/
-/*
- * This class was automatically generated with
- * Castor 1.1, using an XML
- * Schema.
- * $Id$
*/
-
package jalview.schemabinding.version2;
//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
+import jalview.util.MessageManager;
+
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
@@ -270,9 +266,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._alcodonFrameList.size())
{
- throw new IndexOutOfBoundsException("getAlcodonFrame: Index value '"
- + index + "' not in range [0.."
- + (this._alcodonFrameList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "getAlcodonFrame",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._alcodonFrameList.size() - 1)).toString()
+ }));
}
return (jalview.schemabinding.version2.AlcodonFrame) _alcodonFrameList
@@ -320,9 +318,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._annotationList.size())
{
- throw new IndexOutOfBoundsException("getAnnotation: Index value '"
- + index + "' not in range [0.."
- + (this._annotationList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "getAnnotation",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._alcodonFrameList.size() - 1)).toString()
+ }));
}
return (jalview.schemabinding.version2.Annotation) _annotationList
@@ -393,9 +393,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceList.size())
{
- throw new IndexOutOfBoundsException("getSequence: Index value '"
- + index + "' not in range [0.."
- + (this._sequenceList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "getSequence",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._sequenceList.size() - 1)).toString()
+ }));
}
return (jalview.schemabinding.version2.Sequence) _sequenceList
@@ -444,10 +446,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceSetPropertiesList.size())
{
- throw new IndexOutOfBoundsException(
- "getSequenceSetProperties: Index value '" + index
- + "' not in range [0.."
- + (this._sequenceSetPropertiesList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "getSequenceSetProperties",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._sequenceSetPropertiesList.size() - 1)).toString()
+ }));
}
return (jalview.schemabinding.version2.SequenceSetProperties) _sequenceSetPropertiesList
@@ -683,9 +686,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._alcodonFrameList.size())
{
- throw new IndexOutOfBoundsException("setAlcodonFrame: Index value '"
- + index + "' not in range [0.."
- + (this._alcodonFrameList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "setAlcodonFrame",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._alcodonFrameList.size() - 1)).toString()
+ }));
}
this._alcodonFrameList.set(index, vAlcodonFrame);
@@ -723,9 +728,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._annotationList.size())
{
- throw new IndexOutOfBoundsException("setAnnotation: Index value '"
- + index + "' not in range [0.."
- + (this._annotationList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "setAnnotation",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._annotationList.size() - 1)).toString()
+ }));
}
this._annotationList.set(index, vAnnotation);
@@ -788,9 +795,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceList.size())
{
- throw new IndexOutOfBoundsException("setSequence: Index value '"
- + index + "' not in range [0.."
- + (this._sequenceList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "setSequence",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._sequenceList.size() - 1)).toString()
+ }));
}
this._sequenceList.set(index, vSequence);
@@ -829,10 +838,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceSetPropertiesList.size())
{
- throw new IndexOutOfBoundsException(
- "setSequenceSetProperties: Index value '" + index
- + "' not in range [0.."
- + (this._sequenceSetPropertiesList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "setSequenceSetProperties",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._sequenceSetPropertiesList.size() - 1)).toString()
+ }));
}
this._sequenceSetPropertiesList.set(index, vSequenceSetProperties);