X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FSequenceSetDescriptor.java;h=70ad2dc8a3b0a7909893a8333777a9bb6f963e1d;hb=9e69e298da663ca4c43f631bcca4dbb54da969f8;hp=81946b551b2df625a2959fb475d537f0a7091b7f;hpb=24681b2bc3e0cdc0d77dd73cad05deea14264fab;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/SequenceSetDescriptor.java b/src/jalview/schemabinding/version2/SequenceSetDescriptor.java
index 81946b5..70ad2dc 100755
--- a/src/jalview/schemabinding/version2/SequenceSetDescriptor.java
+++ b/src/jalview/schemabinding/version2/SequenceSetDescriptor.java
@@ -103,47 +103,6 @@ public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDe
             fieldValidator.setValidator(typeValidator);
         }
         desc.setValidator(fieldValidator);
-        //-- _aligned
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_aligned", "aligned", org.exolab.castor.xml.NodeType.Attribute);
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {
-            public java.lang.Object getValue( java.lang.Object object ) 
-                throws IllegalStateException
-            {
-                SequenceSet target = (SequenceSet) object;
-                if(!target.hasAligned())
-                    return null;
-                return (target.getAligned() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
-            }
-            public void setValue( java.lang.Object object, java.lang.Object value) 
-                throws IllegalStateException, IllegalArgumentException
-            {
-                try {
-                    SequenceSet target = (SequenceSet) object;
-                    // if null, use delete method for optional primitives 
-                    if (value == null) {
-                        target.deleteAligned();
-                        return;
-                    }
-                    target.setAligned( ((java.lang.Boolean)value).booleanValue());
-                }
-                catch (java.lang.Exception ex) {
-                    throw new IllegalStateException(ex.toString());
-                }
-            }
-            public java.lang.Object newInstance( java.lang.Object parent ) {
-                return null;
-            }
-        } );
-        desc.setHandler(handler);
-        addFieldDescriptor(desc);
-        
-        //-- validation code for: _aligned
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();
-        { //-- local scope
-            BooleanValidator typeValidator = new BooleanValidator();
-            fieldValidator.setValidator(typeValidator);
-        }
-        desc.setValidator(fieldValidator);
         //-- initialize element descriptors
         
         //-- _sequenceList