X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FThresholdLine.java;h=14f65ae6624054743d9a8c048aa1a569d349a1e8;hb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;hp=ca6d5de64845f38c8e5a7d30c54e8a601d14bb3e;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/ThresholdLine.java b/src/jalview/schemabinding/version2/ThresholdLine.java
old mode 100755
new mode 100644
index ca6d5de..14f65ae
--- a/src/jalview/schemabinding/version2/ThresholdLine.java
+++ b/src/jalview/schemabinding/version2/ThresholdLine.java
@@ -1,252 +1,258 @@
-/*
- * This class was automatically generated with
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.schemabinding.version2;
-
-//---------------------------------/
-//- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.xml.*;
-
-/**
- * Class ThresholdLine.
- *
- * @version $Revision$ $Date$
- */
-public class ThresholdLine
-    implements java.io.Serializable
-{
-
-  //--------------------------/
-  //- Class/Member Variables -/
-  //--------------------------/
-
-  /**
-   * Field _label
-   */
-  private java.lang.String _label;
-
-  /**
-   * Field _value
-   */
-  private float _value;
-
-  /**
-   * keeps track of state for field: _value
-   */
-  private boolean _has_value;
-
-  /**
-   * Field _colour
-   */
-  private int _colour;
-
-  /**
-   * keeps track of state for field: _colour
-   */
-  private boolean _has_colour;
-
-  //----------------/
-  //- Constructors -/
-  //----------------/
-
-  public ThresholdLine()
-  {
-    super();
-  } //-- jalview.schemabinding.version2.ThresholdLine()
-
-  //-----------/
-  //- Methods -/
-  //-----------/
-
-  /**
-   * Method deleteColour
-   *
-   */
-  public void deleteColour()
-  {
-    this._has_colour = false;
-  } //-- void deleteColour()
-
-  /**
-   * Method deleteValue
-   *
-   */
-  public void deleteValue()
-  {
-    this._has_value = false;
-  } //-- void deleteValue()
-
-  /**
-   * Returns the value of field 'colour'.
-   *
-   * @return int
-   * @return the value of field 'colour'.
-   */
-  public int getColour()
-  {
-    return this._colour;
-  } //-- int getColour()
-
-  /**
-   * Returns the value of field 'label'.
-   *
-   * @return String
-   * @return the value of field 'label'.
-   */
-  public java.lang.String getLabel()
-  {
-    return this._label;
-  } //-- java.lang.String getLabel()
-
-  /**
-   * Returns the value of field 'value'.
-   *
-   * @return float
-   * @return the value of field 'value'.
-   */
-  public float getValue()
-  {
-    return this._value;
-  } //-- float getValue()
-
-  /**
-   * Method hasColour
-   *
-   *
-   *
-   * @return boolean
-   */
-  public boolean hasColour()
-  {
-    return this._has_colour;
-  } //-- boolean hasColour()
-
-  /**
-   * Method hasValue
-   *
-   *
-   *
-   * @return boolean
-   */
-  public boolean hasValue()
-  {
-    return this._has_value;
-  } //-- boolean hasValue()
-
-  /**
-   * Method isValid
-   *
-   *
-   *
-   * @return boolean
-   */
-  public boolean isValid()
-  {
-    try
-    {
-      validate();
-    }
-    catch (org.exolab.castor.xml.ValidationException vex)
-    {
-      return false;
-    }
-    return true;
-  } //-- boolean isValid()
-
-  /**
-   * Method marshal
-   *
-   *
-   *
-   * @param out
-   */
-  public void marshal(java.io.Writer out)
-      throws org.exolab.castor.xml.MarshalException,
-      org.exolab.castor.xml.ValidationException
-  {
-
-    Marshaller.marshal(this, out);
-  } //-- void marshal(java.io.Writer)
-
-  /**
-   * Method marshal
-   *
-   *
-   *
-   * @param handler
-   */
-  public void marshal(org.xml.sax.ContentHandler handler)
-      throws java.io.IOException, org.exolab.castor.xml.MarshalException,
-      org.exolab.castor.xml.ValidationException
-  {
-
-    Marshaller.marshal(this, handler);
-  } //-- void marshal(org.xml.sax.ContentHandler)
-
-  /**
-   * Sets the value of field 'colour'.
-   *
-   * @param colour the value of field 'colour'.
-   */
-  public void setColour(int colour)
-  {
-    this._colour = colour;
-    this._has_colour = true;
-  } //-- void setColour(int)
-
-  /**
-   * Sets the value of field 'label'.
-   *
-   * @param label the value of field 'label'.
-   */
-  public void setLabel(java.lang.String label)
-  {
-    this._label = label;
-  } //-- void setLabel(java.lang.String)
-
-  /**
-   * Sets the value of field 'value'.
-   *
-   * @param value the value of field 'value'.
-   */
-  public void setValue(float value)
-  {
-    this._value = value;
-    this._has_value = true;
-  } //-- void setValue(float)
-
-  /**
-   * Method unmarshal
-   *
-   *
-   *
-   * @param reader
-   * @return Object
-   */
-  public static java.lang.Object unmarshal(java.io.Reader reader)
-      throws org.exolab.castor.xml.MarshalException,
-      org.exolab.castor.xml.ValidationException
-  {
-    return (jalview.schemabinding.version2.ThresholdLine) Unmarshaller.
-        unmarshal(jalview.schemabinding.version2.ThresholdLine.class, reader);
-  } //-- java.lang.Object unmarshal(java.io.Reader)
-
-  /**
-   * Method validate
-   *
-   */
-  public void validate()
-      throws org.exolab.castor.xml.ValidationException
-  {
-    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.
-        Validator();
-    validator.validate(this);
-  } //-- void validate()
-
-}
+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ *******************************************************************************/
+/*
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+  //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class ThresholdLine.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class ThresholdLine implements java.io.Serializable {
+
+
+      //--------------------------/
+     //- Class/Member Variables -/
+    //--------------------------/
+
+    /**
+     * Field _label.
+     */
+    private java.lang.String _label;
+
+    /**
+     * Field _value.
+     */
+    private float _value;
+
+    /**
+     * keeps track of state for field: _value
+     */
+    private boolean _has_value;
+
+    /**
+     * Field _colour.
+     */
+    private int _colour;
+
+    /**
+     * keeps track of state for field: _colour
+     */
+    private boolean _has_colour;
+
+
+      //----------------/
+     //- Constructors -/
+    //----------------/
+
+    public ThresholdLine() {
+        super();
+    }
+
+
+      //-----------/
+     //- Methods -/
+    //-----------/
+
+    /**
+     */
+    public void deleteColour(
+    ) {
+        this._has_colour= false;
+    }
+
+    /**
+     */
+    public void deleteValue(
+    ) {
+        this._has_value= false;
+    }
+
+    /**
+     * Returns the value of field 'colour'.
+     * 
+     * @return the value of field 'Colour'.
+     */
+    public int getColour(
+    ) {
+        return this._colour;
+    }
+
+    /**
+     * Returns the value of field 'label'.
+     * 
+     * @return the value of field 'Label'.
+     */
+    public java.lang.String getLabel(
+    ) {
+        return this._label;
+    }
+
+    /**
+     * Returns the value of field 'value'.
+     * 
+     * @return the value of field 'Value'.
+     */
+    public float getValue(
+    ) {
+        return this._value;
+    }
+
+    /**
+     * Method hasColour.
+     * 
+     * @return true if at least one Colour has been added
+     */
+    public boolean hasColour(
+    ) {
+        return this._has_colour;
+    }
+
+    /**
+     * Method hasValue.
+     * 
+     * @return true if at least one Value has been added
+     */
+    public boolean hasValue(
+    ) {
+        return this._has_value;
+    }
+
+    /**
+     * Method isValid.
+     * 
+     * @return true if this object is valid according to the schema
+     */
+    public boolean isValid(
+    ) {
+        try {
+            validate();
+        } catch (org.exolab.castor.xml.ValidationException vex) {
+            return false;
+        }
+        return true;
+    }
+
+    /**
+     * 
+     * 
+     * @param out
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     */
+    public void marshal(
+            final java.io.Writer out)
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        Marshaller.marshal(this, out);
+    }
+
+    /**
+     * 
+     * 
+     * @param handler
+     * @throws java.io.IOException if an IOException occurs during
+     * marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     */
+    public void marshal(
+            final org.xml.sax.ContentHandler handler)
+    throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        Marshaller.marshal(this, handler);
+    }
+
+    /**
+     * Sets the value of field 'colour'.
+     * 
+     * @param colour the value of field 'colour'.
+     */
+    public void setColour(
+            final int colour) {
+        this._colour = colour;
+        this._has_colour = true;
+    }
+
+    /**
+     * Sets the value of field 'label'.
+     * 
+     * @param label the value of field 'label'.
+     */
+    public void setLabel(
+            final java.lang.String label) {
+        this._label = label;
+    }
+
+    /**
+     * Sets the value of field 'value'.
+     * 
+     * @param value the value of field 'value'.
+     */
+    public void setValue(
+            final float value) {
+        this._value = value;
+        this._has_value = true;
+    }
+
+    /**
+     * Method unmarshal.
+     * 
+     * @param reader
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     * @return the unmarshaled
+     * jalview.schemabinding.version2.ThresholdLine
+     */
+    public static jalview.schemabinding.version2.ThresholdLine unmarshal(
+            final java.io.Reader reader)
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        return (jalview.schemabinding.version2.ThresholdLine) Unmarshaller.unmarshal(jalview.schemabinding.version2.ThresholdLine.class, reader);
+    }
+
+    /**
+     * 
+     * 
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     */
+    public void validate(
+    )
+    throws org.exolab.castor.xml.ValidationException {
+        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+        validator.validate(this);
+    }
+
+}