X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FViewport.java;h=aa97a9581e3dff1320276b2c24033eba5218ed33;hb=49cc4c921eac8fd966dfe4fa4b86d00655ea2f67;hp=557e4548fea6a67d3686d9843c26723f89e1ee4f;hpb=374d49bb6bd6bb285f7e49560e2bcb8004ff4af3;p=jalview.git diff --git a/src/jalview/schemabinding/version2/Viewport.java b/src/jalview/schemabinding/version2/Viewport.java index 557e454..aa97a95 100755 --- a/src/jalview/schemabinding/version2/Viewport.java +++ b/src/jalview/schemabinding/version2/Viewport.java @@ -1,6 +1,6 @@ /* * This class was automatically generated with - * Castor 0.9.6, using an XML + * Castor 1.1, using an XML * Schema. * $Id$ */ @@ -11,17 +11,8 @@ package jalview.schemabinding.version2; //- Imported classes and packages -/ //---------------------------------/ -import java.io.IOException; -import java.io.Reader; -import java.io.Serializable; -import java.io.Writer; -import java.util.Enumeration; -import java.util.Vector; -import org.exolab.castor.xml.MarshalException; import org.exolab.castor.xml.Marshaller; import org.exolab.castor.xml.Unmarshaller; -import org.exolab.castor.xml.ValidationException; -import org.xml.sax.ContentHandler; /** * Class Viewport. @@ -36,7 +27,7 @@ public class Viewport implements java.io.Serializable { //--------------------------/ /** - * Field _conservationSelected + * Field _conservationSelected. */ private boolean _conservationSelected; @@ -46,7 +37,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_conservationSelected; /** - * Field _pidSelected + * Field _pidSelected. */ private boolean _pidSelected; @@ -56,12 +47,12 @@ public class Viewport implements java.io.Serializable { private boolean _has_pidSelected; /** - * Field _bgColour + * Field _bgColour. */ private java.lang.String _bgColour; /** - * Field _consThreshold + * Field _consThreshold. */ private int _consThreshold; @@ -71,7 +62,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_consThreshold; /** - * Field _pidThreshold + * Field _pidThreshold. */ private int _pidThreshold; @@ -81,12 +72,12 @@ public class Viewport implements java.io.Serializable { private boolean _has_pidThreshold; /** - * Field _title + * Field _title. */ private java.lang.String _title; /** - * Field _showFullId + * Field _showFullId. */ private boolean _showFullId; @@ -96,7 +87,17 @@ public class Viewport implements java.io.Serializable { private boolean _has_showFullId; /** - * Field _showText + * Field _rightAlignIds. + */ + private boolean _rightAlignIds; + + /** + * keeps track of state for field: _rightAlignIds + */ + private boolean _has_rightAlignIds; + + /** + * Field _showText. */ private boolean _showText; @@ -106,7 +107,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_showText; /** - * Field _showColourText + * Field _showColourText. */ private boolean _showColourText; @@ -116,7 +117,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_showColourText; /** - * Field _showBoxes + * Field _showBoxes. */ private boolean _showBoxes; @@ -126,7 +127,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_showBoxes; /** - * Field _wrapAlignment + * Field _wrapAlignment. */ private boolean _wrapAlignment; @@ -136,7 +137,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_wrapAlignment; /** - * Field _renderGaps + * Field _renderGaps. */ private boolean _renderGaps; @@ -146,7 +147,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_renderGaps; /** - * Field _showSequenceFeatures + * Field _showSequenceFeatures. */ private boolean _showSequenceFeatures; @@ -156,7 +157,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_showSequenceFeatures; /** - * Field _showAnnotation + * Field _showAnnotation. */ private boolean _showAnnotation; @@ -166,37 +167,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_showAnnotation; /** - * Field _showConservation - */ - private boolean _showConservation; - - /** - * keeps track of state for field: _showConservation - */ - private boolean _has_showConservation; - - /** - * Field _showQuality - */ - private boolean _showQuality; - - /** - * keeps track of state for field: _showQuality - */ - private boolean _has_showQuality; - - /** - * Field _showIdentity - */ - private boolean _showIdentity; - - /** - * keeps track of state for field: _showIdentity - */ - private boolean _has_showIdentity; - - /** - * Field _xpos + * Field _xpos. */ private int _xpos; @@ -206,7 +177,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_xpos; /** - * Field _ypos + * Field _ypos. */ private int _ypos; @@ -216,7 +187,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_ypos; /** - * Field _width + * Field _width. */ private int _width; @@ -226,7 +197,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_width; /** - * Field _height + * Field _height. */ private int _height; @@ -236,7 +207,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_height; /** - * Field _startRes + * Field _startRes. */ private int _startRes; @@ -246,7 +217,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_startRes; /** - * Field _startSeq + * Field _startSeq. */ private int _startSeq; @@ -256,12 +227,12 @@ public class Viewport implements java.io.Serializable { private boolean _has_startSeq; /** - * Field _fontName + * Field _fontName. */ private java.lang.String _fontName; /** - * Field _fontSize + * Field _fontSize. */ private int _fontSize; @@ -271,7 +242,7 @@ public class Viewport implements java.io.Serializable { private boolean _has_fontSize; /** - * Field _fontStyle + * Field _fontStyle. */ private int _fontStyle; @@ -281,12 +252,62 @@ public class Viewport implements java.io.Serializable { private boolean _has_fontStyle; /** - * Field _annotationColours + * Field _viewName. + */ + private java.lang.String _viewName; + + /** + * Field _sequenceSetId. + */ + private java.lang.String _sequenceSetId; + + /** + * Field _gatheredViews. + */ + private boolean _gatheredViews; + + /** + * keeps track of state for field: _gatheredViews + */ + private boolean _has_gatheredViews; + + /** + * Field _textCol1. + */ + private int _textCol1; + + /** + * keeps track of state for field: _textCol1 + */ + private boolean _has_textCol1; + + /** + * Field _textCol2. + */ + private int _textCol2; + + /** + * keeps track of state for field: _textCol2 + */ + private boolean _has_textCol2; + + /** + * Field _textColThreshold. + */ + private int _textColThreshold; + + /** + * keeps track of state for field: _textColThreshold + */ + private boolean _has_textColThreshold; + + /** + * Field _annotationColours. */ private jalview.schemabinding.version2.AnnotationColours _annotationColours; /** - * Field _hiddenColumnsList + * Field _hiddenColumnsList. */ private java.util.Vector _hiddenColumnsList; @@ -297,8 +318,8 @@ public class Viewport implements java.io.Serializable { public Viewport() { super(); - _hiddenColumnsList = new Vector(); - } //-- jalview.schemabinding.version2.Viewport() + this._hiddenColumnsList = new java.util.Vector(); + } //-----------/ @@ -306,941 +327,1025 @@ public class Viewport implements java.io.Serializable { //-----------/ /** - * Method addHiddenColumns - * * * * @param vHiddenColumns + * @throws java.lang.IndexOutOfBoundsException if the index + * given is outside the bounds of the collection */ - public void addHiddenColumns(jalview.schemabinding.version2.HiddenColumns vHiddenColumns) - throws java.lang.IndexOutOfBoundsException - { - _hiddenColumnsList.addElement(vHiddenColumns); - } //-- void addHiddenColumns(jalview.schemabinding.version2.HiddenColumns) + public void addHiddenColumns( + final jalview.schemabinding.version2.HiddenColumns vHiddenColumns) + throws java.lang.IndexOutOfBoundsException { + this._hiddenColumnsList.addElement(vHiddenColumns); + } /** - * Method addHiddenColumns - * * * * @param index * @param vHiddenColumns + * @throws java.lang.IndexOutOfBoundsException if the index + * given is outside the bounds of the collection */ - public void addHiddenColumns(int index, jalview.schemabinding.version2.HiddenColumns vHiddenColumns) - throws java.lang.IndexOutOfBoundsException - { - _hiddenColumnsList.insertElementAt(vHiddenColumns, index); - } //-- void addHiddenColumns(int, jalview.schemabinding.version2.HiddenColumns) + public void addHiddenColumns( + final int index, + final jalview.schemabinding.version2.HiddenColumns vHiddenColumns) + throws java.lang.IndexOutOfBoundsException { + this._hiddenColumnsList.add(index, vHiddenColumns); + } /** - * Method deleteConsThreshold - * */ - public void deleteConsThreshold() - { + public void deleteConsThreshold( + ) { this._has_consThreshold= false; - } //-- void deleteConsThreshold() + } /** - * Method deleteConservationSelected - * */ - public void deleteConservationSelected() - { + public void deleteConservationSelected( + ) { this._has_conservationSelected= false; - } //-- void deleteConservationSelected() + } /** - * Method deleteFontSize - * */ - public void deleteFontSize() - { + public void deleteFontSize( + ) { this._has_fontSize= false; - } //-- void deleteFontSize() + } /** - * Method deleteFontStyle - * */ - public void deleteFontStyle() - { + public void deleteFontStyle( + ) { this._has_fontStyle= false; - } //-- void deleteFontStyle() + } /** - * Method deleteHeight - * */ - public void deleteHeight() - { + public void deleteGatheredViews( + ) { + this._has_gatheredViews= false; + } + + /** + */ + public void deleteHeight( + ) { this._has_height= false; - } //-- void deleteHeight() + } /** - * Method deletePidSelected - * */ - public void deletePidSelected() - { + public void deletePidSelected( + ) { this._has_pidSelected= false; - } //-- void deletePidSelected() + } /** - * Method deletePidThreshold - * */ - public void deletePidThreshold() - { + public void deletePidThreshold( + ) { this._has_pidThreshold= false; - } //-- void deletePidThreshold() + } /** - * Method deleteRenderGaps - * */ - public void deleteRenderGaps() - { + public void deleteRenderGaps( + ) { this._has_renderGaps= false; - } //-- void deleteRenderGaps() + } /** - * Method deleteShowAnnotation - * */ - public void deleteShowAnnotation() - { + public void deleteRightAlignIds( + ) { + this._has_rightAlignIds= false; + } + + /** + */ + public void deleteShowAnnotation( + ) { this._has_showAnnotation= false; - } //-- void deleteShowAnnotation() + } /** - * Method deleteShowBoxes - * */ - public void deleteShowBoxes() - { + public void deleteShowBoxes( + ) { this._has_showBoxes= false; - } //-- void deleteShowBoxes() + } /** - * Method deleteShowColourText - * */ - public void deleteShowColourText() - { + public void deleteShowColourText( + ) { this._has_showColourText= false; - } //-- void deleteShowColourText() + } /** - * Method deleteShowConservation - * */ - public void deleteShowConservation() - { - this._has_showConservation= false; - } //-- void deleteShowConservation() + public void deleteShowFullId( + ) { + this._has_showFullId= false; + } /** - * Method deleteShowFullId - * */ - public void deleteShowFullId() - { - this._has_showFullId= false; - } //-- void deleteShowFullId() + public void deleteShowSequenceFeatures( + ) { + this._has_showSequenceFeatures= false; + } /** - * Method deleteShowIdentity - * */ - public void deleteShowIdentity() - { - this._has_showIdentity= false; - } //-- void deleteShowIdentity() + public void deleteShowText( + ) { + this._has_showText= false; + } /** - * Method deleteShowQuality - * */ - public void deleteShowQuality() - { - this._has_showQuality= false; - } //-- void deleteShowQuality() + public void deleteStartRes( + ) { + this._has_startRes= false; + } /** - * Method deleteShowSequenceFeatures - * */ - public void deleteShowSequenceFeatures() - { - this._has_showSequenceFeatures= false; - } //-- void deleteShowSequenceFeatures() + public void deleteStartSeq( + ) { + this._has_startSeq= false; + } /** - * Method deleteShowText - * */ - public void deleteShowText() - { - this._has_showText= false; - } //-- void deleteShowText() + public void deleteTextCol1( + ) { + this._has_textCol1= false; + } /** - * Method deleteStartRes - * */ - public void deleteStartRes() - { - this._has_startRes= false; - } //-- void deleteStartRes() + public void deleteTextCol2( + ) { + this._has_textCol2= false; + } /** - * Method deleteStartSeq - * */ - public void deleteStartSeq() - { - this._has_startSeq= false; - } //-- void deleteStartSeq() + public void deleteTextColThreshold( + ) { + this._has_textColThreshold= false; + } /** - * Method deleteWidth - * */ - public void deleteWidth() - { + public void deleteWidth( + ) { this._has_width= false; - } //-- void deleteWidth() + } /** - * Method deleteWrapAlignment - * */ - public void deleteWrapAlignment() - { + public void deleteWrapAlignment( + ) { this._has_wrapAlignment= false; - } //-- void deleteWrapAlignment() + } /** - * Method deleteXpos - * */ - public void deleteXpos() - { + public void deleteXpos( + ) { this._has_xpos= false; - } //-- void deleteXpos() + } /** - * Method deleteYpos - * */ - public void deleteYpos() - { + public void deleteYpos( + ) { this._has_ypos= false; - } //-- void deleteYpos() + } /** - * Method enumerateHiddenColumns - * - * + * Method enumerateHiddenColumns. * - * @return Enumeration + * @return an Enumeration over all + * jalview.schemabinding.version2.HiddenColumns elements */ - public java.util.Enumeration enumerateHiddenColumns() - { - return _hiddenColumnsList.elements(); - } //-- java.util.Enumeration enumerateHiddenColumns() + public java.util.Enumeration enumerateHiddenColumns( + ) { + return this._hiddenColumnsList.elements(); + } /** * Returns the value of field 'annotationColours'. * - * @return AnnotationColours - * @return the value of field 'annotationColours'. + * @return the value of field 'AnnotationColours'. */ - public jalview.schemabinding.version2.AnnotationColours getAnnotationColours() - { + public jalview.schemabinding.version2.AnnotationColours getAnnotationColours( + ) { return this._annotationColours; - } //-- jalview.schemabinding.version2.AnnotationColours getAnnotationColours() + } /** * Returns the value of field 'bgColour'. * - * @return String - * @return the value of field 'bgColour'. + * @return the value of field 'BgColour'. */ - public java.lang.String getBgColour() - { + public java.lang.String getBgColour( + ) { return this._bgColour; - } //-- java.lang.String getBgColour() + } /** * Returns the value of field 'consThreshold'. * - * @return int - * @return the value of field 'consThreshold'. + * @return the value of field 'ConsThreshold'. */ - public int getConsThreshold() - { + public int getConsThreshold( + ) { return this._consThreshold; - } //-- int getConsThreshold() + } /** * Returns the value of field 'conservationSelected'. * - * @return boolean - * @return the value of field 'conservationSelected'. + * @return the value of field 'ConservationSelected'. */ - public boolean getConservationSelected() - { + public boolean getConservationSelected( + ) { return this._conservationSelected; - } //-- boolean getConservationSelected() + } /** * Returns the value of field 'fontName'. * - * @return String - * @return the value of field 'fontName'. + * @return the value of field 'FontName'. */ - public java.lang.String getFontName() - { + public java.lang.String getFontName( + ) { return this._fontName; - } //-- java.lang.String getFontName() + } /** * Returns the value of field 'fontSize'. * - * @return int - * @return the value of field 'fontSize'. + * @return the value of field 'FontSize'. */ - public int getFontSize() - { + public int getFontSize( + ) { return this._fontSize; - } //-- int getFontSize() + } /** * Returns the value of field 'fontStyle'. * - * @return int - * @return the value of field 'fontStyle'. + * @return the value of field 'FontStyle'. */ - public int getFontStyle() - { + public int getFontStyle( + ) { return this._fontStyle; - } //-- int getFontStyle() + } + + /** + * Returns the value of field 'gatheredViews'. + * + * @return the value of field 'GatheredViews'. + */ + public boolean getGatheredViews( + ) { + return this._gatheredViews; + } /** * Returns the value of field 'height'. * - * @return int - * @return the value of field 'height'. + * @return the value of field 'Height'. */ - public int getHeight() - { + public int getHeight( + ) { return this._height; - } //-- int getHeight() + } /** - * Method getHiddenColumns - * - * + * Method getHiddenColumns. * * @param index - * @return HiddenColumns - */ - public jalview.schemabinding.version2.HiddenColumns getHiddenColumns(int index) - throws java.lang.IndexOutOfBoundsException - { - //-- check bounds for index - if ((index < 0) || (index > _hiddenColumnsList.size())) { - throw new IndexOutOfBoundsException(); + * @throws java.lang.IndexOutOfBoundsException if the index + * given is outside the bounds of the collection + * @return the value of the + * jalview.schemabinding.version2.HiddenColumns at the given + * index + */ + public jalview.schemabinding.version2.HiddenColumns getHiddenColumns( + final int index) + throws java.lang.IndexOutOfBoundsException { + // check bounds for index + if (index < 0 || index >= this._hiddenColumnsList.size()) { + throw new IndexOutOfBoundsException("getHiddenColumns: Index value '" + index + "' not in range [0.." + (this._hiddenColumnsList.size() - 1) + "]"); } - return (jalview.schemabinding.version2.HiddenColumns) _hiddenColumnsList.elementAt(index); - } //-- jalview.schemabinding.version2.HiddenColumns getHiddenColumns(int) + return (jalview.schemabinding.version2.HiddenColumns) _hiddenColumnsList.get(index); + } /** - * Method getHiddenColumns - * + * Method getHiddenColumns.Returns the contents of the + * collection in an Array.
Note: Just in case the + * collection contents are changing in another thread, we pass + * a 0-length Array of the correct type into the API call. + * This way we know that the Array returned is of + * exactly the correct length. * - * - * @return HiddenColumns + * @return this collection as an Array */ - public jalview.schemabinding.version2.HiddenColumns[] getHiddenColumns() - { - int size = _hiddenColumnsList.size(); - jalview.schemabinding.version2.HiddenColumns[] mArray = new jalview.schemabinding.version2.HiddenColumns[size]; - for (int index = 0; index < size; index++) { - mArray[index] = (jalview.schemabinding.version2.HiddenColumns) _hiddenColumnsList.elementAt(index); - } - return mArray; - } //-- jalview.schemabinding.version2.HiddenColumns[] getHiddenColumns() + public jalview.schemabinding.version2.HiddenColumns[] getHiddenColumns( + ) { + jalview.schemabinding.version2.HiddenColumns[] array = new jalview.schemabinding.version2.HiddenColumns[0]; + return (jalview.schemabinding.version2.HiddenColumns[]) this._hiddenColumnsList.toArray(array); + } /** - * Method getHiddenColumnsCount - * + * Method getHiddenColumnsCount. * - * - * @return int + * @return the size of this collection */ - public int getHiddenColumnsCount() - { - return _hiddenColumnsList.size(); - } //-- int getHiddenColumnsCount() + public int getHiddenColumnsCount( + ) { + return this._hiddenColumnsList.size(); + } /** * Returns the value of field 'pidSelected'. * - * @return boolean - * @return the value of field 'pidSelected'. + * @return the value of field 'PidSelected'. */ - public boolean getPidSelected() - { + public boolean getPidSelected( + ) { return this._pidSelected; - } //-- boolean getPidSelected() + } /** * Returns the value of field 'pidThreshold'. * - * @return int - * @return the value of field 'pidThreshold'. + * @return the value of field 'PidThreshold'. */ - public int getPidThreshold() - { + public int getPidThreshold( + ) { return this._pidThreshold; - } //-- int getPidThreshold() + } /** * Returns the value of field 'renderGaps'. * - * @return boolean - * @return the value of field 'renderGaps'. + * @return the value of field 'RenderGaps'. */ - public boolean getRenderGaps() - { + public boolean getRenderGaps( + ) { return this._renderGaps; - } //-- boolean getRenderGaps() + } + + /** + * Returns the value of field 'rightAlignIds'. + * + * @return the value of field 'RightAlignIds'. + */ + public boolean getRightAlignIds( + ) { + return this._rightAlignIds; + } + + /** + * Returns the value of field 'sequenceSetId'. + * + * @return the value of field 'SequenceSetId'. + */ + public java.lang.String getSequenceSetId( + ) { + return this._sequenceSetId; + } /** * Returns the value of field 'showAnnotation'. * - * @return boolean - * @return the value of field 'showAnnotation'. + * @return the value of field 'ShowAnnotation'. */ - public boolean getShowAnnotation() - { + public boolean getShowAnnotation( + ) { return this._showAnnotation; - } //-- boolean getShowAnnotation() + } /** * Returns the value of field 'showBoxes'. * - * @return boolean - * @return the value of field 'showBoxes'. + * @return the value of field 'ShowBoxes'. */ - public boolean getShowBoxes() - { + public boolean getShowBoxes( + ) { return this._showBoxes; - } //-- boolean getShowBoxes() + } /** * Returns the value of field 'showColourText'. * - * @return boolean - * @return the value of field 'showColourText'. + * @return the value of field 'ShowColourText'. */ - public boolean getShowColourText() - { + public boolean getShowColourText( + ) { return this._showColourText; - } //-- boolean getShowColourText() + } /** - * Returns the value of field 'showConservation'. + * Returns the value of field 'showFullId'. * - * @return boolean - * @return the value of field 'showConservation'. + * @return the value of field 'ShowFullId'. */ - public boolean getShowConservation() - { - return this._showConservation; - } //-- boolean getShowConservation() + public boolean getShowFullId( + ) { + return this._showFullId; + } /** - * Returns the value of field 'showFullId'. + * Returns the value of field 'showSequenceFeatures'. * - * @return boolean - * @return the value of field 'showFullId'. + * @return the value of field 'ShowSequenceFeatures'. */ - public boolean getShowFullId() - { - return this._showFullId; - } //-- boolean getShowFullId() + public boolean getShowSequenceFeatures( + ) { + return this._showSequenceFeatures; + } /** - * Returns the value of field 'showIdentity'. + * Returns the value of field 'showText'. * - * @return boolean - * @return the value of field 'showIdentity'. + * @return the value of field 'ShowText'. */ - public boolean getShowIdentity() - { - return this._showIdentity; - } //-- boolean getShowIdentity() + public boolean getShowText( + ) { + return this._showText; + } /** - * Returns the value of field 'showQuality'. + * Returns the value of field 'startRes'. * - * @return boolean - * @return the value of field 'showQuality'. + * @return the value of field 'StartRes'. */ - public boolean getShowQuality() - { - return this._showQuality; - } //-- boolean getShowQuality() + public int getStartRes( + ) { + return this._startRes; + } /** - * Returns the value of field 'showSequenceFeatures'. + * Returns the value of field 'startSeq'. * - * @return boolean - * @return the value of field 'showSequenceFeatures'. + * @return the value of field 'StartSeq'. */ - public boolean getShowSequenceFeatures() - { - return this._showSequenceFeatures; - } //-- boolean getShowSequenceFeatures() + public int getStartSeq( + ) { + return this._startSeq; + } /** - * Returns the value of field 'showText'. + * Returns the value of field 'textCol1'. * - * @return boolean - * @return the value of field 'showText'. + * @return the value of field 'TextCol1'. */ - public boolean getShowText() - { - return this._showText; - } //-- boolean getShowText() + public int getTextCol1( + ) { + return this._textCol1; + } /** - * Returns the value of field 'startRes'. + * Returns the value of field 'textCol2'. * - * @return int - * @return the value of field 'startRes'. + * @return the value of field 'TextCol2'. */ - public int getStartRes() - { - return this._startRes; - } //-- int getStartRes() + public int getTextCol2( + ) { + return this._textCol2; + } /** - * Returns the value of field 'startSeq'. + * Returns the value of field 'textColThreshold'. * - * @return int - * @return the value of field 'startSeq'. + * @return the value of field 'TextColThreshold'. */ - public int getStartSeq() - { - return this._startSeq; - } //-- int getStartSeq() + public int getTextColThreshold( + ) { + return this._textColThreshold; + } /** * Returns the value of field 'title'. * - * @return String - * @return the value of field 'title'. + * @return the value of field 'Title'. */ - public java.lang.String getTitle() - { + public java.lang.String getTitle( + ) { return this._title; - } //-- java.lang.String getTitle() + } + + /** + * Returns the value of field 'viewName'. + * + * @return the value of field 'ViewName'. + */ + public java.lang.String getViewName( + ) { + return this._viewName; + } /** * Returns the value of field 'width'. * - * @return int - * @return the value of field 'width'. + * @return the value of field 'Width'. */ - public int getWidth() - { + public int getWidth( + ) { return this._width; - } //-- int getWidth() + } /** * Returns the value of field 'wrapAlignment'. * - * @return boolean - * @return the value of field 'wrapAlignment'. + * @return the value of field 'WrapAlignment'. */ - public boolean getWrapAlignment() - { + public boolean getWrapAlignment( + ) { return this._wrapAlignment; - } //-- boolean getWrapAlignment() + } /** * Returns the value of field 'xpos'. * - * @return int - * @return the value of field 'xpos'. + * @return the value of field 'Xpos'. */ - public int getXpos() - { + public int getXpos( + ) { return this._xpos; - } //-- int getXpos() + } /** * Returns the value of field 'ypos'. * - * @return int - * @return the value of field 'ypos'. + * @return the value of field 'Ypos'. */ - public int getYpos() - { + public int getYpos( + ) { return this._ypos; - } //-- int getYpos() + } /** - * Method hasConsThreshold - * - * + * Method hasConsThreshold. * - * @return boolean + * @return true if at least one ConsThreshold has been added */ - public boolean hasConsThreshold() - { + public boolean hasConsThreshold( + ) { return this._has_consThreshold; - } //-- boolean hasConsThreshold() + } /** - * Method hasConservationSelected - * - * + * Method hasConservationSelected. * - * @return boolean + * @return true if at least one ConservationSelected has been + * added */ - public boolean hasConservationSelected() - { + public boolean hasConservationSelected( + ) { return this._has_conservationSelected; - } //-- boolean hasConservationSelected() + } /** - * Method hasFontSize + * Method hasFontSize. * - * - * - * @return boolean + * @return true if at least one FontSize has been added */ - public boolean hasFontSize() - { + public boolean hasFontSize( + ) { return this._has_fontSize; - } //-- boolean hasFontSize() + } /** - * Method hasFontStyle - * + * Method hasFontStyle. * - * - * @return boolean + * @return true if at least one FontStyle has been added */ - public boolean hasFontStyle() - { + public boolean hasFontStyle( + ) { return this._has_fontStyle; - } //-- boolean hasFontStyle() + } /** - * Method hasHeight - * + * Method hasGatheredViews. * + * @return true if at least one GatheredViews has been added + */ + public boolean hasGatheredViews( + ) { + return this._has_gatheredViews; + } + + /** + * Method hasHeight. * - * @return boolean + * @return true if at least one Height has been added */ - public boolean hasHeight() - { + public boolean hasHeight( + ) { return this._has_height; - } //-- boolean hasHeight() + } /** - * Method hasPidSelected - * - * + * Method hasPidSelected. * - * @return boolean + * @return true if at least one PidSelected has been added */ - public boolean hasPidSelected() - { + public boolean hasPidSelected( + ) { return this._has_pidSelected; - } //-- boolean hasPidSelected() + } /** - * Method hasPidThreshold + * Method hasPidThreshold. * - * - * - * @return boolean + * @return true if at least one PidThreshold has been added */ - public boolean hasPidThreshold() - { + public boolean hasPidThreshold( + ) { return this._has_pidThreshold; - } //-- boolean hasPidThreshold() + } /** - * Method hasRenderGaps - * - * + * Method hasRenderGaps. * - * @return boolean + * @return true if at least one RenderGaps has been added */ - public boolean hasRenderGaps() - { + public boolean hasRenderGaps( + ) { return this._has_renderGaps; - } //-- boolean hasRenderGaps() + } /** - * Method hasShowAnnotation - * + * Method hasRightAlignIds. * + * @return true if at least one RightAlignIds has been added + */ + public boolean hasRightAlignIds( + ) { + return this._has_rightAlignIds; + } + + /** + * Method hasShowAnnotation. * - * @return boolean + * @return true if at least one ShowAnnotation has been added */ - public boolean hasShowAnnotation() - { + public boolean hasShowAnnotation( + ) { return this._has_showAnnotation; - } //-- boolean hasShowAnnotation() + } /** - * Method hasShowBoxes - * + * Method hasShowBoxes. * - * - * @return boolean + * @return true if at least one ShowBoxes has been added */ - public boolean hasShowBoxes() - { + public boolean hasShowBoxes( + ) { return this._has_showBoxes; - } //-- boolean hasShowBoxes() + } /** - * Method hasShowColourText - * - * + * Method hasShowColourText. * - * @return boolean + * @return true if at least one ShowColourText has been added */ - public boolean hasShowColourText() - { + public boolean hasShowColourText( + ) { return this._has_showColourText; - } //-- boolean hasShowColourText() + } /** - * Method hasShowConservation - * - * + * Method hasShowFullId. * - * @return boolean + * @return true if at least one ShowFullId has been added */ - public boolean hasShowConservation() - { - return this._has_showConservation; - } //-- boolean hasShowConservation() + public boolean hasShowFullId( + ) { + return this._has_showFullId; + } /** - * Method hasShowFullId - * - * + * Method hasShowSequenceFeatures. * - * @return boolean + * @return true if at least one ShowSequenceFeatures has been + * added */ - public boolean hasShowFullId() - { - return this._has_showFullId; - } //-- boolean hasShowFullId() + public boolean hasShowSequenceFeatures( + ) { + return this._has_showSequenceFeatures; + } /** - * Method hasShowIdentity + * Method hasShowText. * - * - * - * @return boolean + * @return true if at least one ShowText has been added */ - public boolean hasShowIdentity() - { - return this._has_showIdentity; - } //-- boolean hasShowIdentity() + public boolean hasShowText( + ) { + return this._has_showText; + } /** - * Method hasShowQuality - * - * + * Method hasStartRes. * - * @return boolean + * @return true if at least one StartRes has been added */ - public boolean hasShowQuality() - { - return this._has_showQuality; - } //-- boolean hasShowQuality() + public boolean hasStartRes( + ) { + return this._has_startRes; + } /** - * Method hasShowSequenceFeatures - * - * + * Method hasStartSeq. * - * @return boolean + * @return true if at least one StartSeq has been added */ - public boolean hasShowSequenceFeatures() - { - return this._has_showSequenceFeatures; - } //-- boolean hasShowSequenceFeatures() + public boolean hasStartSeq( + ) { + return this._has_startSeq; + } /** - * Method hasShowText + * Method hasTextCol1. * - * - * - * @return boolean + * @return true if at least one TextCol1 has been added */ - public boolean hasShowText() - { - return this._has_showText; - } //-- boolean hasShowText() + public boolean hasTextCol1( + ) { + return this._has_textCol1; + } /** - * Method hasStartRes - * - * + * Method hasTextCol2. * - * @return boolean + * @return true if at least one TextCol2 has been added */ - public boolean hasStartRes() - { - return this._has_startRes; - } //-- boolean hasStartRes() + public boolean hasTextCol2( + ) { + return this._has_textCol2; + } /** - * Method hasStartSeq - * + * Method hasTextColThreshold. * + * @return true if at least one TextColThreshold has been added + */ + public boolean hasTextColThreshold( + ) { + return this._has_textColThreshold; + } + + /** + * Method hasWidth. * - * @return boolean + * @return true if at least one Width has been added */ - public boolean hasStartSeq() - { - return this._has_startSeq; - } //-- boolean hasStartSeq() + public boolean hasWidth( + ) { + return this._has_width; + } /** - * Method hasWidth + * Method hasWrapAlignment. * + * @return true if at least one WrapAlignment has been added + */ + public boolean hasWrapAlignment( + ) { + return this._has_wrapAlignment; + } + + /** + * Method hasXpos. * + * @return true if at least one Xpos has been added + */ + public boolean hasXpos( + ) { + return this._has_xpos; + } + + /** + * Method hasYpos. * - * @return boolean + * @return true if at least one Ypos has been added */ - public boolean hasWidth() - { - return this._has_width; - } //-- boolean hasWidth() + public boolean hasYpos( + ) { + return this._has_ypos; + } /** - * Method hasWrapAlignment + * Returns the value of field 'conservationSelected'. * + * @return the value of field 'ConservationSelected'. + */ + public boolean isConservationSelected( + ) { + return this._conservationSelected; + } + + /** + * Returns the value of field 'gatheredViews'. * + * @return the value of field 'GatheredViews'. + */ + public boolean isGatheredViews( + ) { + return this._gatheredViews; + } + + /** + * Returns the value of field 'pidSelected'. * - * @return boolean + * @return the value of field 'PidSelected'. */ - public boolean hasWrapAlignment() - { - return this._has_wrapAlignment; - } //-- boolean hasWrapAlignment() + public boolean isPidSelected( + ) { + return this._pidSelected; + } /** - * Method hasXpos + * Returns the value of field 'renderGaps'. * + * @return the value of field 'RenderGaps'. + */ + public boolean isRenderGaps( + ) { + return this._renderGaps; + } + + /** + * Returns the value of field 'rightAlignIds'. * + * @return the value of field 'RightAlignIds'. + */ + public boolean isRightAlignIds( + ) { + return this._rightAlignIds; + } + + /** + * Returns the value of field 'showAnnotation'. * - * @return boolean + * @return the value of field 'ShowAnnotation'. */ - public boolean hasXpos() - { - return this._has_xpos; - } //-- boolean hasXpos() + public boolean isShowAnnotation( + ) { + return this._showAnnotation; + } /** - * Method hasYpos + * Returns the value of field 'showBoxes'. * + * @return the value of field 'ShowBoxes'. + */ + public boolean isShowBoxes( + ) { + return this._showBoxes; + } + + /** + * Returns the value of field 'showColourText'. * + * @return the value of field 'ShowColourText'. + */ + public boolean isShowColourText( + ) { + return this._showColourText; + } + + /** + * Returns the value of field 'showFullId'. * - * @return boolean + * @return the value of field 'ShowFullId'. */ - public boolean hasYpos() - { - return this._has_ypos; - } //-- boolean hasYpos() + public boolean isShowFullId( + ) { + return this._showFullId; + } /** - * Method isValid + * Returns the value of field 'showSequenceFeatures'. * + * @return the value of field 'ShowSequenceFeatures'. + */ + public boolean isShowSequenceFeatures( + ) { + return this._showSequenceFeatures; + } + + /** + * Returns the value of field 'showText'. * + * @return the value of field 'ShowText'. + */ + public boolean isShowText( + ) { + return this._showText; + } + + /** + * Method isValid. * - * @return boolean + * @return true if this object is valid according to the schema */ - public boolean isValid() - { + public boolean isValid( + ) { try { validate(); - } - catch (org.exolab.castor.xml.ValidationException vex) { + } catch (org.exolab.castor.xml.ValidationException vex) { return false; } return true; - } //-- boolean isValid() + } /** - * Method marshal + * Returns the value of field 'wrapAlignment'. * + * @return the value of field 'WrapAlignment'. + */ + public boolean isWrapAlignment( + ) { + return this._wrapAlignment; + } + + /** * * * @param out - */ - public void marshal(java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException - { - + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + */ + public void marshal( + final java.io.Writer out) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, out); - } //-- void marshal(java.io.Writer) + } /** - * Method marshal - * * * * @param handler - */ - public void marshal(org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException - { - + * @throws java.io.IOException if an IOException occurs during + * marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + */ + public void marshal( + final org.xml.sax.ContentHandler handler) + throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, handler); - } //-- void marshal(org.xml.sax.ContentHandler) + } /** - * Method removeAllHiddenColumns - * */ - public void removeAllHiddenColumns() - { - _hiddenColumnsList.removeAllElements(); - } //-- void removeAllHiddenColumns() + public void removeAllHiddenColumns( + ) { + this._hiddenColumnsList.clear(); + } /** - * Method removeHiddenColumns - * + * Method removeHiddenColumns. * + * @param vHiddenColumns + * @return true if the object was removed from the collection. + */ + public boolean removeHiddenColumns( + final jalview.schemabinding.version2.HiddenColumns vHiddenColumns) { + boolean removed = _hiddenColumnsList.remove(vHiddenColumns); + return removed; + } + + /** + * Method removeHiddenColumnsAt. * * @param index - * @return HiddenColumns + * @return the element removed from the collection */ - public jalview.schemabinding.version2.HiddenColumns removeHiddenColumns(int index) - { - java.lang.Object obj = _hiddenColumnsList.elementAt(index); - _hiddenColumnsList.removeElementAt(index); + public jalview.schemabinding.version2.HiddenColumns removeHiddenColumnsAt( + final int index) { + java.lang.Object obj = this._hiddenColumnsList.remove(index); return (jalview.schemabinding.version2.HiddenColumns) obj; - } //-- jalview.schemabinding.version2.HiddenColumns removeHiddenColumns(int) + } /** * Sets the value of field 'annotationColours'. @@ -1248,31 +1353,31 @@ public class Viewport implements java.io.Serializable { * @param annotationColours the value of field * 'annotationColours'. */ - public void setAnnotationColours(jalview.schemabinding.version2.AnnotationColours annotationColours) - { + public void setAnnotationColours( + final jalview.schemabinding.version2.AnnotationColours annotationColours) { this._annotationColours = annotationColours; - } //-- void setAnnotationColours(jalview.schemabinding.version2.AnnotationColours) + } /** * Sets the value of field 'bgColour'. * * @param bgColour the value of field 'bgColour'. */ - public void setBgColour(java.lang.String bgColour) - { + public void setBgColour( + final java.lang.String bgColour) { this._bgColour = bgColour; - } //-- void setBgColour(java.lang.String) + } /** * Sets the value of field 'consThreshold'. * * @param consThreshold the value of field 'consThreshold'. */ - public void setConsThreshold(int consThreshold) - { + public void setConsThreshold( + final int consThreshold) { this._consThreshold = consThreshold; this._has_consThreshold = true; - } //-- void setConsThreshold(int) + } /** * Sets the value of field 'conservationSelected'. @@ -1280,198 +1385,198 @@ public class Viewport implements java.io.Serializable { * @param conservationSelected the value of field * 'conservationSelected'. */ - public void setConservationSelected(boolean conservationSelected) - { + public void setConservationSelected( + final boolean conservationSelected) { this._conservationSelected = conservationSelected; this._has_conservationSelected = true; - } //-- void setConservationSelected(boolean) + } /** * Sets the value of field 'fontName'. * * @param fontName the value of field 'fontName'. */ - public void setFontName(java.lang.String fontName) - { + public void setFontName( + final java.lang.String fontName) { this._fontName = fontName; - } //-- void setFontName(java.lang.String) + } /** * Sets the value of field 'fontSize'. * * @param fontSize the value of field 'fontSize'. */ - public void setFontSize(int fontSize) - { + public void setFontSize( + final int fontSize) { this._fontSize = fontSize; this._has_fontSize = true; - } //-- void setFontSize(int) + } /** * Sets the value of field 'fontStyle'. * * @param fontStyle the value of field 'fontStyle'. */ - public void setFontStyle(int fontStyle) - { + public void setFontStyle( + final int fontStyle) { this._fontStyle = fontStyle; this._has_fontStyle = true; - } //-- void setFontStyle(int) + } + + /** + * Sets the value of field 'gatheredViews'. + * + * @param gatheredViews the value of field 'gatheredViews'. + */ + public void setGatheredViews( + final boolean gatheredViews) { + this._gatheredViews = gatheredViews; + this._has_gatheredViews = true; + } /** * Sets the value of field 'height'. * * @param height the value of field 'height'. */ - public void setHeight(int height) - { + public void setHeight( + final int height) { this._height = height; this._has_height = true; - } //-- void setHeight(int) + } /** - * Method setHiddenColumns - * * * * @param index * @param vHiddenColumns - */ - public void setHiddenColumns(int index, jalview.schemabinding.version2.HiddenColumns vHiddenColumns) - throws java.lang.IndexOutOfBoundsException - { - //-- check bounds for index - if ((index < 0) || (index > _hiddenColumnsList.size())) { - throw new IndexOutOfBoundsException(); + * @throws java.lang.IndexOutOfBoundsException if the index + * given is outside the bounds of the collection + */ + public void setHiddenColumns( + final int index, + final jalview.schemabinding.version2.HiddenColumns vHiddenColumns) + throws java.lang.IndexOutOfBoundsException { + // check bounds for index + if (index < 0 || index >= this._hiddenColumnsList.size()) { + throw new IndexOutOfBoundsException("setHiddenColumns: Index value '" + index + "' not in range [0.." + (this._hiddenColumnsList.size() - 1) + "]"); } - _hiddenColumnsList.setElementAt(vHiddenColumns, index); - } //-- void setHiddenColumns(int, jalview.schemabinding.version2.HiddenColumns) + + this._hiddenColumnsList.set(index, vHiddenColumns); + } /** - * Method setHiddenColumns - * * * - * @param hiddenColumnsArray + * @param vHiddenColumnsArray */ - public void setHiddenColumns(jalview.schemabinding.version2.HiddenColumns[] hiddenColumnsArray) - { + public void setHiddenColumns( + final jalview.schemabinding.version2.HiddenColumns[] vHiddenColumnsArray) { //-- copy array - _hiddenColumnsList.removeAllElements(); - for (int i = 0; i < hiddenColumnsArray.length; i++) { - _hiddenColumnsList.addElement(hiddenColumnsArray[i]); + _hiddenColumnsList.clear(); + + for (int i = 0; i < vHiddenColumnsArray.length; i++) { + this._hiddenColumnsList.add(vHiddenColumnsArray[i]); } - } //-- void setHiddenColumns(jalview.schemabinding.version2.HiddenColumns) + } /** * Sets the value of field 'pidSelected'. * * @param pidSelected the value of field 'pidSelected'. */ - public void setPidSelected(boolean pidSelected) - { + public void setPidSelected( + final boolean pidSelected) { this._pidSelected = pidSelected; this._has_pidSelected = true; - } //-- void setPidSelected(boolean) + } /** * Sets the value of field 'pidThreshold'. * * @param pidThreshold the value of field 'pidThreshold'. */ - public void setPidThreshold(int pidThreshold) - { + public void setPidThreshold( + final int pidThreshold) { this._pidThreshold = pidThreshold; this._has_pidThreshold = true; - } //-- void setPidThreshold(int) + } /** * Sets the value of field 'renderGaps'. * * @param renderGaps the value of field 'renderGaps'. */ - public void setRenderGaps(boolean renderGaps) - { + public void setRenderGaps( + final boolean renderGaps) { this._renderGaps = renderGaps; this._has_renderGaps = true; - } //-- void setRenderGaps(boolean) + } + + /** + * Sets the value of field 'rightAlignIds'. + * + * @param rightAlignIds the value of field 'rightAlignIds'. + */ + public void setRightAlignIds( + final boolean rightAlignIds) { + this._rightAlignIds = rightAlignIds; + this._has_rightAlignIds = true; + } + + /** + * Sets the value of field 'sequenceSetId'. + * + * @param sequenceSetId the value of field 'sequenceSetId'. + */ + public void setSequenceSetId( + final java.lang.String sequenceSetId) { + this._sequenceSetId = sequenceSetId; + } /** * Sets the value of field 'showAnnotation'. * * @param showAnnotation the value of field 'showAnnotation'. */ - public void setShowAnnotation(boolean showAnnotation) - { + public void setShowAnnotation( + final boolean showAnnotation) { this._showAnnotation = showAnnotation; this._has_showAnnotation = true; - } //-- void setShowAnnotation(boolean) + } /** * Sets the value of field 'showBoxes'. * * @param showBoxes the value of field 'showBoxes'. */ - public void setShowBoxes(boolean showBoxes) - { + public void setShowBoxes( + final boolean showBoxes) { this._showBoxes = showBoxes; this._has_showBoxes = true; - } //-- void setShowBoxes(boolean) + } /** * Sets the value of field 'showColourText'. * * @param showColourText the value of field 'showColourText'. */ - public void setShowColourText(boolean showColourText) - { + public void setShowColourText( + final boolean showColourText) { this._showColourText = showColourText; this._has_showColourText = true; - } //-- void setShowColourText(boolean) - - /** - * Sets the value of field 'showConservation'. - * - * @param showConservation the value of field 'showConservation' - */ - public void setShowConservation(boolean showConservation) - { - this._showConservation = showConservation; - this._has_showConservation = true; - } //-- void setShowConservation(boolean) + } /** * Sets the value of field 'showFullId'. * * @param showFullId the value of field 'showFullId'. */ - public void setShowFullId(boolean showFullId) - { + public void setShowFullId( + final boolean showFullId) { this._showFullId = showFullId; this._has_showFullId = true; - } //-- void setShowFullId(boolean) - - /** - * Sets the value of field 'showIdentity'. - * - * @param showIdentity the value of field 'showIdentity'. - */ - public void setShowIdentity(boolean showIdentity) - { - this._showIdentity = showIdentity; - this._has_showIdentity = true; - } //-- void setShowIdentity(boolean) - - /** - * Sets the value of field 'showQuality'. - * - * @param showQuality the value of field 'showQuality'. - */ - public void setShowQuality(boolean showQuality) - { - this._showQuality = showQuality; - this._has_showQuality = true; - } //-- void setShowQuality(boolean) + } /** * Sets the value of field 'showSequenceFeatures'. @@ -1479,122 +1584,170 @@ public class Viewport implements java.io.Serializable { * @param showSequenceFeatures the value of field * 'showSequenceFeatures'. */ - public void setShowSequenceFeatures(boolean showSequenceFeatures) - { + public void setShowSequenceFeatures( + final boolean showSequenceFeatures) { this._showSequenceFeatures = showSequenceFeatures; this._has_showSequenceFeatures = true; - } //-- void setShowSequenceFeatures(boolean) + } /** * Sets the value of field 'showText'. * * @param showText the value of field 'showText'. */ - public void setShowText(boolean showText) - { + public void setShowText( + final boolean showText) { this._showText = showText; this._has_showText = true; - } //-- void setShowText(boolean) + } /** * Sets the value of field 'startRes'. * * @param startRes the value of field 'startRes'. */ - public void setStartRes(int startRes) - { + public void setStartRes( + final int startRes) { this._startRes = startRes; this._has_startRes = true; - } //-- void setStartRes(int) + } /** * Sets the value of field 'startSeq'. * * @param startSeq the value of field 'startSeq'. */ - public void setStartSeq(int startSeq) - { + public void setStartSeq( + final int startSeq) { this._startSeq = startSeq; this._has_startSeq = true; - } //-- void setStartSeq(int) + } + + /** + * Sets the value of field 'textCol1'. + * + * @param textCol1 the value of field 'textCol1'. + */ + public void setTextCol1( + final int textCol1) { + this._textCol1 = textCol1; + this._has_textCol1 = true; + } + + /** + * Sets the value of field 'textCol2'. + * + * @param textCol2 the value of field 'textCol2'. + */ + public void setTextCol2( + final int textCol2) { + this._textCol2 = textCol2; + this._has_textCol2 = true; + } + + /** + * Sets the value of field 'textColThreshold'. + * + * @param textColThreshold the value of field 'textColThreshold' + */ + public void setTextColThreshold( + final int textColThreshold) { + this._textColThreshold = textColThreshold; + this._has_textColThreshold = true; + } /** * Sets the value of field 'title'. * * @param title the value of field 'title'. */ - public void setTitle(java.lang.String title) - { + public void setTitle( + final java.lang.String title) { this._title = title; - } //-- void setTitle(java.lang.String) + } + + /** + * Sets the value of field 'viewName'. + * + * @param viewName the value of field 'viewName'. + */ + public void setViewName( + final java.lang.String viewName) { + this._viewName = viewName; + } /** * Sets the value of field 'width'. * * @param width the value of field 'width'. */ - public void setWidth(int width) - { + public void setWidth( + final int width) { this._width = width; this._has_width = true; - } //-- void setWidth(int) + } /** * Sets the value of field 'wrapAlignment'. * * @param wrapAlignment the value of field 'wrapAlignment'. */ - public void setWrapAlignment(boolean wrapAlignment) - { + public void setWrapAlignment( + final boolean wrapAlignment) { this._wrapAlignment = wrapAlignment; this._has_wrapAlignment = true; - } //-- void setWrapAlignment(boolean) + } /** * Sets the value of field 'xpos'. * * @param xpos the value of field 'xpos'. */ - public void setXpos(int xpos) - { + public void setXpos( + final int xpos) { this._xpos = xpos; this._has_xpos = true; - } //-- void setXpos(int) + } /** * Sets the value of field 'ypos'. * * @param ypos the value of field 'ypos'. */ - public void setYpos(int ypos) - { + public void setYpos( + final int ypos) { this._ypos = ypos; this._has_ypos = true; - } //-- void setYpos(int) + } /** - * Method unmarshal - * - * + * Method unmarshal. * * @param reader - * @return Object - */ - public static java.lang.Object unmarshal(java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException - { + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + * @return the unmarshaled + * jalview.schemabinding.version2.Viewport + */ + public static jalview.schemabinding.version2.Viewport unmarshal( + final java.io.Reader reader) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { return (jalview.schemabinding.version2.Viewport) Unmarshaller.unmarshal(jalview.schemabinding.version2.Viewport.class, reader); - } //-- java.lang.Object unmarshal(java.io.Reader) + } /** - * Method validate * + * + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema */ - public void validate() - throws org.exolab.castor.xml.ValidationException - { + public void validate( + ) + throws org.exolab.castor.xml.ValidationException { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); - } //-- void validate() + } }