X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2Fdescriptors%2FSequenceSetDescriptor.java;h=aa0c798fb1ab020d76e28bd9c3cdc4a62fc51f13;hb=ca384c307f32631d32ffd450d69a49abeff4f5df;hp=2801940f03c43d56d2c87701045891e139a03f14;hpb=09ee1649c4427f534331aa2017a890529f0932f5;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java b/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
index 2801940..aa0c798 100644
--- a/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
@@ -45,11 +45,6 @@ public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDe
      */
     private java.lang.String _xmlName;
 
-    /**
-     * Field _identity.
-     */
-    private org.exolab.castor.xml.XMLFieldDescriptor _identity;
-
 
       //----------------/
      //- Constructors -/
@@ -107,6 +102,43 @@ public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDe
             typeValidator.setWhiteSpace("preserve");
         }
         desc.setValidator(fieldValidator);
+        //-- _datasetId
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_datasetId", "datasetId", org.exolab.castor.xml.NodeType.Attribute);
+        desc.setImmutable(true);
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {
+            public java.lang.Object getValue( java.lang.Object object ) 
+                throws IllegalStateException
+            {
+                SequenceSet target = (SequenceSet) object;
+                return target.getDatasetId();
+            }
+            public void setValue( java.lang.Object object, java.lang.Object value) 
+                throws IllegalStateException, IllegalArgumentException
+            {
+                try {
+                    SequenceSet target = (SequenceSet) object;
+                    target.setDatasetId( (java.lang.String) value);
+                } catch (java.lang.Exception ex) {
+                    throw new IllegalStateException(ex.toString());
+                }
+            }
+            public java.lang.Object newInstance(java.lang.Object parent) {
+                return null;
+            }
+        };
+        desc.setHandler(handler);
+        desc.setMultivalued(false);
+        addFieldDescriptor(desc);
+        
+        //-- validation code for: _datasetId
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();
+        { //-- local scope
+            org.exolab.castor.xml.validators.StringValidator typeValidator;
+            typeValidator = new org.exolab.castor.xml.validators.StringValidator();
+            fieldValidator.setValidator(typeValidator);
+            typeValidator.setWhiteSpace("preserve");
+        }
+        desc.setValidator(fieldValidator);
         //-- initialize element descriptors
         
         //-- _sequenceList
@@ -235,6 +267,48 @@ public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDe
         { //-- local scope
         }
         desc.setValidator(fieldValidator);
+        //-- _alcodonFrameList
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AlcodonFrame.class, "_alcodonFrameList", "AlcodonFrame", org.exolab.castor.xml.NodeType.Element);
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {
+            public java.lang.Object getValue( java.lang.Object object ) 
+                throws IllegalStateException
+            {
+                SequenceSet target = (SequenceSet) object;
+                return target.getAlcodonFrame();
+            }
+            public void setValue( java.lang.Object object, java.lang.Object value) 
+                throws IllegalStateException, IllegalArgumentException
+            {
+                try {
+                    SequenceSet target = (SequenceSet) object;
+                    target.addAlcodonFrame( (jalview.schemabinding.version2.AlcodonFrame) value);
+                } catch (java.lang.Exception ex) {
+                    throw new IllegalStateException(ex.toString());
+                }
+            }
+            public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
+                try {
+                    SequenceSet target = (SequenceSet) object;
+                    target.removeAllAlcodonFrame();
+                } catch (java.lang.Exception ex) {
+                    throw new IllegalStateException(ex.toString());
+                }
+            }
+            public java.lang.Object newInstance(java.lang.Object parent) {
+                return new jalview.schemabinding.version2.AlcodonFrame();
+            }
+        };
+        desc.setHandler(handler);
+        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
+        desc.setMultivalued(true);
+        addFieldDescriptor(desc);
+        
+        //-- validation code for: _alcodonFrameList
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();
+        fieldValidator.setMinOccurs(0);
+        { //-- local scope
+        }
+        desc.setValidator(fieldValidator);
     }
 
 
@@ -260,7 +334,7 @@ public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDe
      */
     public org.exolab.castor.mapping.FieldDescriptor getIdentity(
     ) {
-        return _identity;
+        return super.getIdentity();
     }
 
     /**