X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FAnnotationColourGradient.java;h=1a4d7d73fb1f35c135e8eb0bf62d5e35abb50fd1;hb=497958b4e5217efaa3ddeece38f38c3a6e98cb96;hp=713e55d7ea4e94e0ff050dbd867d21a87544c162;hpb=70fd4c40d0b2046c6d402e365e4d04f9cfbb68ef;p=jalview.git

diff --git a/src/jalview/schemes/AnnotationColourGradient.java b/src/jalview/schemes/AnnotationColourGradient.java
index 713e55d..1a4d7d7 100755
--- a/src/jalview/schemes/AnnotationColourGradient.java
+++ b/src/jalview/schemes/AnnotationColourGradient.java
@@ -234,7 +234,7 @@ public class AnnotationColourGradient extends FollowerColourScheme
   public Color findColour(char c, int j, SequenceI seq)
   {
     Color currentColour = Color.white;
-    AlignmentAnnotation annotation = (seqAssociated ? seqannot.get(seq)
+    AlignmentAnnotation annotation = (seqAssociated && seqannot!=null ? seqannot.get(seq)
             : this.annotation);
     if (annotation == null)
     {