X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FAnnotationColourGradient.java;h=b31eabc80295e11d7c7d6e32a7f80b3c51df2e40;hb=b57a02c25e335d033c97f8a6bacd6b54f62bd2b6;hp=78e850bacd01ba858e7357ab074005c8d8baa0a2;hpb=1cc81e06ac2faa5ee4b8879e9fa019956e34259f;p=jalview.git

diff --git a/src/jalview/schemes/AnnotationColourGradient.java b/src/jalview/schemes/AnnotationColourGradient.java
index 78e850b..b31eabc 100755
--- a/src/jalview/schemes/AnnotationColourGradient.java
+++ b/src/jalview/schemes/AnnotationColourGradient.java
@@ -108,13 +108,16 @@ public class AnnotationColourGradient extends ResidueColourScheme
   {
     // TODO Auto-generated method stub
     super.alignmentChanged(alignment, hiddenReps);
-    
+
     if (seqAssociated && annotation.getCalcId() != null)
     {
-      if (seqannot!=null) {
+      if (seqannot != null)
+      {
         seqannot.clear();
-      } else {
-        seqannot=new IdentityHashMap<SequenceI, AlignmentAnnotation>();
+      }
+      else
+      {
+        seqannot = new IdentityHashMap<SequenceI, AlignmentAnnotation>();
       }
       for (AlignmentAnnotation alan : alignment.findAnnotation(annotation
               .getCalcId()))
@@ -193,8 +196,9 @@ public class AnnotationColourGradient extends ResidueColourScheme
   public Color findColour(char c, int j, SequenceI seq)
   {
     Color currentColour = Color.white;
-    AlignmentAnnotation annotation=(seqAssociated ? seqannot.get(seq):this.annotation);
-    if (annotation==null)
+    AlignmentAnnotation annotation = (seqAssociated ? seqannot.get(seq)
+            : this.annotation);
+    if (annotation == null)
     {
       return currentColour;
     }