X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FBlosum62ColourScheme.java;h=0db55c03c8b0946692a5709acc6fa28744358476;hb=990fd5f012601024aaeeb09e2901791d242636c4;hp=02545a3272fad1dfeb5973aa7f3f5fe1dfeff24f;hpb=4d2e0d36506302cc00677527725bcccbdf27d766;p=jalview.git

diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java
index 02545a3..0db55c0 100755
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -18,9 +18,9 @@
  */
 package jalview.schemes;
 
-
 import java.awt.*;
-import jalview.analysis.AAFrequency;
+
+import jalview.analysis.*;
 
 public class Blosum62ColourScheme
     extends ResidueColourScheme
@@ -32,10 +32,10 @@ public class Blosum62ColourScheme
 
   public Color findColour(char res, int j)
   {
-    if ('a' <= res && res <= 'z' )
+    if ('a' <= res && res <= 'z')
     {
-       // TO UPPERCASE !!!
-       res -= ('a' - 'A');
+      // TO UPPERCASE !!!
+      res -= ('a' - 'A');
     }
 
     if (consensus == null ||
@@ -48,7 +48,7 @@ public class Blosum62ColourScheme
 
     Color currentColour;
 
-    if (!jalview.util.Comparison.isGap( res ))
+    if (!jalview.util.Comparison.isGap(res))
     {
       String max = (String) consensus[j].get(AAFrequency.MAXRESIDUE);
 
@@ -79,8 +79,10 @@ public class Blosum62ColourScheme
         }
       }
 
-      if(conservationColouring)
-       currentColour =  applyConservation(currentColour, j);
+      if (conservationColouring)
+      {
+        currentColour = applyConservation(currentColour, j);
+      }
     }
     else
     {