X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FBlosum62ColourScheme.java;h=2c0836de99c6d7dec867547d7579e9c3cd4c30e2;hb=b0c3862ae342f88419e5e685de2b56f060358c05;hp=6e91e0b2256677455e368362efb51ae48ca60cb3;hpb=4e377b5c02352a12537100dddd2f8a2b84536205;p=jalview.git

diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java
index 6e91e0b..2c0836d 100755
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -39,7 +39,7 @@ public class Blosum62ColourScheme
     }
 
 
-    if ( (threshold != 0) && !aboveThreshold(s, j))
+    if ( j>=consensus.length || (threshold != 0 && !aboveThreshold(s, j) ))
     {
       return Color.white;
     }