X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FBlosum62ColourScheme.java;h=77986720432060b8d5391e5318f8510040105c35;hb=5d2e589a842cf831e4fdeff6b8ed7e7ce6729fd5;hp=6c83920d7a5ae03d19955f2e0e2bb9fe119bff20;hpb=d18ec5d6a72d262bbd6a8233010b92737b3840b7;p=jalview.git

diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java
index 6c83920..7798672 100755
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -21,29 +21,18 @@ package jalview.schemes;
 
 import java.util.*;
 import java.awt.*;
-import jalview.gui.*;
-import jalview.datamodel.*;
 
 public class Blosum62ColourScheme extends ResidueColourScheme
 {
 
-  // need to keep an eye on the changing visible consensus sequence
-  AlignViewport av;
-
-  public Blosum62ColourScheme(AlignViewport av)
+  public Blosum62ColourScheme()
   {
     super();
-    this.av = av;
   }
 
-  public Color findColour(String s, int j, Vector aa)
+  public Color findColour(String s, int j)
   {
-    Hashtable hash;
-
-    if (aa != null)
-      hash = (Hashtable)aa.elementAt(j);
-    else
-      return Color.white;
+    Hashtable hash = (Hashtable)consensus.elementAt(j);
 
     if (!jalview.util.Comparison.isGap((s.charAt(0))))
     {
@@ -73,7 +62,7 @@ public class Blosum62ColourScheme extends ResidueColourScheme
 
   public boolean canThreshold()
   {
-    return false;
+    return true;
   }
 
 }