X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FBlosum62ColourScheme.java;h=c47f17180bc2311648e4cf13693be66c197d6ca7;hb=8b1e1c7cf7bcf6499dad546699c85d8d52e6d86c;hp=37c31f9a7ebbf5518428231cbcea836c7f6c5723;hpb=fc75b80aa07137161c63456c0b69999e80f164d1;p=jalview.git

diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java
index 37c31f9..c47f171 100755
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -47,7 +47,7 @@ public class Blosum62ColourScheme extends ResidueColourScheme
       res -= ('a' - 'A');
     }
 
-    if (consensus == null || j >= consensus.length || consensus[j] == null
+    if (consensus == null || consensus.get(j) == null
             || (threshold != 0 && !aboveThreshold(res, j)))
     {
       return Color.white;
@@ -60,7 +60,7 @@ public class Blosum62ColourScheme extends ResidueColourScheme
       /*
        * test if this is the consensus (or joint consensus) residue
        */
-      String max = consensus[j].getModalResidue();
+      String max = consensus.get(j).getModalResidue();
 
       if (max.indexOf(res) > -1)
       {