X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FBlosum62ColourScheme.java;h=d0546dccc266acf4ffd169d0b0f89c6814afcc60;hb=0e54db5074938de828bc20412dfd59898fafc7db;hp=d91d49fe0410f19ec7349259d745c6229e404936;hpb=1ecf6419aba86993b3c223bf5ec0fa79427baf85;p=jalview.git

diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java
index d91d49f..d0546dc 100755
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -36,9 +36,10 @@ public class Blosum62ColourScheme extends ResidueColourScheme
     this.av = av;
   }
 
-  public Color findColour(SequenceI seq, String s, int j, Vector aa)
+  public Color findColour(String s, int j, Vector aa)
   {
-      if (!s.equals("-") && !s.equals(".") && !s.equals(" "))
+
+      if (!jalview.util.Comparison.isGap((s.charAt(0))))
       {
         String max = av.getVisibleConsensus().charAt(j) + "";