X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FBuriedColourScheme.java;h=290ace89aabb0ec7a05d91e9a56977d14f361a67;hb=1d0f5219658cdf6ad5e1a1cbe6e1bb8cd12e6d85;hp=5caa275b9d8442c18221e689b6e66a056b6bc165;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git diff --git a/src/jalview/schemes/BuriedColourScheme.java b/src/jalview/schemes/BuriedColourScheme.java index 5caa275..290ace8 100755 --- a/src/jalview/schemes/BuriedColourScheme.java +++ b/src/jalview/schemes/BuriedColourScheme.java @@ -1,24 +1,32 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.schemes; -import java.awt.*; +import jalview.api.AlignViewportI; +import jalview.datamodel.AnnotatedCollectionI; +import jalview.datamodel.SequenceCollectionI; +import jalview.datamodel.SequenceI; + +import java.awt.Color; +import java.util.Map; /** * DOCUMENT ME! @@ -45,8 +53,33 @@ public class BuriedColourScheme extends ScoreColourScheme * * @return DOCUMENT ME! */ + @Override public Color makeColour(float c) { return new Color(0, (float) (1.0 - c), c); } + + @Override + public boolean isPeptideSpecific() + { + return true; + } + + @Override + public String getSchemeName() + { + return JalviewColourScheme.Buried.toString(); + } + + /** + * Returns a new instance of this colour scheme with which the given data may + * be coloured + */ + @Override + public ColourSchemeI getInstance(AlignViewportI view, + AnnotatedCollectionI coll, + Map hrs) + { + return new BuriedColourScheme(); + } }