X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FClustalxColourScheme.java;h=04610ef6e377cdd8cc9df6355828e7d3570e5b45;hb=01a838156a865a61389825b3c5c968b6d8eee8f3;hp=1e38a6d00ec197ba359e48b0e8ce5899f5d3b2c4;hpb=1774759f889464551c244c070b7771dabbb4bad2;p=jalview.git

diff --git a/src/jalview/schemes/ClustalxColourScheme.java b/src/jalview/schemes/ClustalxColourScheme.java
index 1e38a6d..04610ef 100755
--- a/src/jalview/schemes/ClustalxColourScheme.java
+++ b/src/jalview/schemes/ClustalxColourScheme.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -86,8 +86,7 @@ public class ClustalxColourScheme
         }
         else
         {
-          res = ( (Integer) ResidueProperties.aaHash.get(seq.charAt(i) +
-              "")).intValue();
+          res =  ResidueProperties.aaIndex[seq.charAt(i)];
         }
 
         cons2[i][res]++;
@@ -258,7 +257,7 @@ public class ClustalxColourScheme
       return Color.white;
     }
 
-    int i = ( (Integer) ResidueProperties.aaHash.get(s)).intValue();
+    int i = ResidueProperties.aaIndex[s.charAt(0)];
 
     currentColour = Color.white;