X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FClustalxColourScheme.java;h=14f0ce6098555ba01d9b728a83532539a970c245;hb=e3e2a13d4cf421bfece25e0a199a5244519b19b2;hp=c556bb22064d7ca4e7b059254ab88be9d5b3f0a4;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git

diff --git a/src/jalview/schemes/ClustalxColourScheme.java b/src/jalview/schemes/ClustalxColourScheme.java
index c556bb2..14f0ce6 100755
--- a/src/jalview/schemes/ClustalxColourScheme.java
+++ b/src/jalview/schemes/ClustalxColourScheme.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -51,9 +51,7 @@ public class ClustalxColourScheme extends ResidueColourScheme // implements
     colhash.put("ORANGE", new Color((float) 0.9, (float) 0.6, (float) 0.3));
     colhash.put("CYAN", new Color((float) 0.1, (float) 0.7, (float) 0.7));
     colhash.put("PINK", new Color((float) 0.9, (float) 0.5, (float) 0.5));
-    colhash
-            .put("MAGENTA",
-                    new Color((float) 0.8, (float) 0.3, (float) 0.8));
+    colhash.put("MAGENTA", new Color((float) 0.8, (float) 0.3, (float) 0.8));
     colhash.put("YELLOW", new Color((float) 0.8, (float) 0.8, (float) 0.0));
   }
 
@@ -212,12 +210,13 @@ public class ClustalxColourScheme extends ResidueColourScheme // implements
     tmp5[3] = conses[19]; // Q
     colours[4] = new ConsensusColour((Color) colhash.get("RED"), tmp5);
 
-    Consensus[] tmp6 = new Consensus[5];
+    Consensus[] tmp6 = new Consensus[6];
     tmp6[0] = conses[3]; // -
     tmp6[1] = conses[29]; // D
     tmp6[2] = conses[10]; // E
-    tmp6[3] = conses[6]; // q
+    tmp6[3] = conses[6]; // QE
     tmp6[4] = conses[19]; // Q
+    tmp6[5] = conses[2]; // DE
     colours[5] = new ConsensusColour((Color) colhash.get("MAGENTA"), tmp6);
 
     Consensus[] tmp7 = new Consensus[5];