X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FClustalxColourScheme.java;h=6eb2ac1ef3b98862193381831be86d3c1a7dd0d0;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=77d7e5be939cf2742e60756a2a65ddbc805dcd3b;hpb=50eb1f492f5c64b56594ee49be8183fab8a2f73b;p=jalview.git diff --git a/src/jalview/schemes/ClustalxColourScheme.java b/src/jalview/schemes/ClustalxColourScheme.java index 77d7e5b..6eb2ac1 100755 --- a/src/jalview/schemes/ClustalxColourScheme.java +++ b/src/jalview/schemes/ClustalxColourScheme.java @@ -1,19 +1,21 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1) + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.schemes; @@ -327,11 +329,13 @@ public class ClustalxColourScheme extends ResidueColourScheme // implements { this.includeGaps = includeGaps; } + @Override public ColourSchemeI applyTo(AnnotatedCollectionI sg, Map hiddenRepSequences) { - ClustalxColourScheme css= new ClustalxColourScheme(sg, hiddenRepSequences); + ClustalxColourScheme css = new ClustalxColourScheme(sg, + hiddenRepSequences); css.includeGaps = includeGaps; return css; }