X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FColourSchemeI.java;h=8deb556e23116b8009f91240cf332ebc023e5a01;hb=0696ddbefc131556c89fa28161d1a85bc1b8195c;hp=96699c6f572874f610b594c127951ca149baf986;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git diff --git a/src/jalview/schemes/ColourSchemeI.java b/src/jalview/schemes/ColourSchemeI.java index 96699c6..8deb556 100755 --- a/src/jalview/schemes/ColourSchemeI.java +++ b/src/jalview/schemes/ColourSchemeI.java @@ -1,43 +1,43 @@ -/* - * Jalview - A Sequence Alignment Editor and Viewer - * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA - */ -package jalview.schemes; - -import java.awt.*; - -public interface ColourSchemeI -{ - public Color findColour(char c); - - public Color findColour(char c, int j); - - public void setConsensus(java.util.Hashtable[] h); - - public void setConservation(jalview.analysis.Conservation c); - - public boolean conservationApplied(); - - public void setConservationInc(int i); - - public int getConservationInc(); - - public int getThreshold(); - - public void setThreshold(int ct, boolean ignoreGaps); - -} +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4) + * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + */ +package jalview.schemes; + +import java.awt.*; + +public interface ColourSchemeI +{ + public Color findColour(char c); + + public Color findColour(char c, int j); + + public void setConsensus(java.util.Hashtable[] h); + + public void setConservation(jalview.analysis.Conservation c); + + public boolean conservationApplied(); + + public void setConservationInc(int i); + + public int getConservationInc(); + + public int getThreshold(); + + public void setThreshold(int ct, boolean ignoreGaps); + +}