X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FColourSchemeI.java;h=8f0f3c5c4dfc8cad9f76ed23dfefe5b76cc28c4f;hb=4f01ddc72d2297c48c57d4f9c25af45b300df154;hp=9cc74f11704bf10229f31c92e73ae8ec74bd0bf3;hpb=efc31b4a8d5cee63555586804a2b79c06bdb5a14;p=jalview.git

diff --git a/src/jalview/schemes/ColourSchemeI.java b/src/jalview/schemes/ColourSchemeI.java
index 9cc74f1..8f0f3c5 100755
--- a/src/jalview/schemes/ColourSchemeI.java
+++ b/src/jalview/schemes/ColourSchemeI.java
@@ -18,8 +18,6 @@
  */
 package jalview.schemes;
 
-import java.util.*;
-
 import java.awt.*;
 
 public interface ColourSchemeI
@@ -28,5 +26,19 @@ public interface ColourSchemeI
 
   public Color findColour(String s, int j);
 
-  public void setConsensus(Vector v);
+  public void setConsensus(java.util.Vector v);
+
+  public void setConservation(jalview.analysis.Conservation c);
+
+  public boolean conservationApplied();
+
+  public void setConservationInc(int i);
+
+  public int getConservationInc();
+
+  public int getThreshold();
+
+  public void setThreshold(int ct, boolean ignoreGaps);
+
+
 }