X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FColourSchemeI.java;h=fb86888a02ce9347285ca203d6b29e878d5a0f24;hb=65a73bdab9f97cadab54162fbbe53ba9f1d3f3be;hp=da99a4af82dbffed651068065c81e9b23e4e8e2c;hpb=b5699e7d9cc2045f623609948ee10a736256abc4;p=jalview.git

diff --git a/src/jalview/schemes/ColourSchemeI.java b/src/jalview/schemes/ColourSchemeI.java
index da99a4a..fb86888 100755
--- a/src/jalview/schemes/ColourSchemeI.java
+++ b/src/jalview/schemes/ColourSchemeI.java
@@ -35,7 +35,7 @@ public interface ColourSchemeI
    * @param c
    * @return the colour for the given character
    */
-  public Color findColour(char c);
+  Color findColour(char c);
 
   /**
    * 
@@ -48,51 +48,51 @@ public interface ColourSchemeI
    * @return context dependent colour for the given symbol at the position in
    *         the given sequence
    */
-  public Color findColour(char c, int j, SequenceI seq);
+  Color findColour(char c, int j, SequenceI seq);
 
   /**
    * assign the given consensus profile for the colourscheme
    */
-  public void setConsensus(ProfilesI hconsensus);
+  void setConsensus(ProfilesI hconsensus);
 
   /**
    * assign the given conservation to the colourscheme
    * 
    * @param c
    */
-  public void setConservation(jalview.analysis.Conservation c);
+  void setConservation(jalview.analysis.Conservation c);
 
   /**
    * enable or disable conservation shading for this colourscheme
    * 
    * @param conservationApplied
    */
-  public void setConservationApplied(boolean conservationApplied);
+  void setConservationApplied(boolean conservationApplied);
 
   /**
    * 
    * @return true if conservation shading is enabled for this colourscheme
    */
-  public boolean conservationApplied();
+  boolean conservationApplied();
 
   /**
    * set scale factor for bleaching of colour in unconserved regions
    * 
    * @param i
    */
-  public void setConservationInc(int i);
+  void setConservationInc(int i);
 
   /**
    * 
    * @return scale factor for bleaching colour in unconserved regions
    */
-  public int getConservationInc();
+  int getConservationInc();
 
   /**
    * 
    * @return percentage identity threshold for applying colourscheme
    */
-  public int getThreshold();
+  int getThreshold();
 
   /**
    * set percentage identity threshold and type of %age identity calculation for
@@ -103,7 +103,7 @@ public interface ColourSchemeI
    * @param ignoreGaps
    *          when true, calculate PID without including gapped positions
    */
-  public void setThreshold(int ct, boolean ignoreGaps);
+  void setThreshold(int ct, boolean ignoreGaps);
 
   /**
    * recalculate dependent data using the given sequence collection, taking
@@ -112,7 +112,7 @@ public interface ColourSchemeI
    * @param alignment
    * @param hiddenReps
    */
-  public void alignmentChanged(AnnotatedCollectionI alignment,
+  void alignmentChanged(AnnotatedCollectionI alignment,
           Map<SequenceI, SequenceCollectionI> hiddenReps);
 
   /**
@@ -123,7 +123,6 @@ public interface ColourSchemeI
    * @param hiddenRepSequences
    * @return copy of current scheme with any inherited settings transfered
    */
-  public ColourSchemeI applyTo(AnnotatedCollectionI sg,
+  ColourSchemeI applyTo(AnnotatedCollectionI sg,
           Map<SequenceI, SequenceCollectionI> hiddenRepSequences);
-
 }