X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FColourSchemeProperty.java;h=3e8e87a2d148949f3feb3625425112ad72d36e1b;hb=293afc4e4e080e8d48cfa99760667b2b1dfe1da0;hp=53e9b60a81e6e14bb701c8c2232fedf7bf8530ae;hpb=94379c810f9115b8564ee7bac46ed119218d5fd2;p=jalview.git

diff --git a/src/jalview/schemes/ColourSchemeProperty.java b/src/jalview/schemes/ColourSchemeProperty.java
index 53e9b60..3e8e87a 100755
--- a/src/jalview/schemes/ColourSchemeProperty.java
+++ b/src/jalview/schemes/ColourSchemeProperty.java
@@ -44,6 +44,8 @@ public class ColourSchemeProperty
    * Returns a colour scheme for the given name, with which the given data may
    * be coloured. The name is not case-sensitive, and may be one of
    * <ul>
+   * <li>any currently registered colour scheme; Jalview by default provides</li>
+   * <ul>
    * <li>Clustal</li>
    * <li>Blosum62</li>
    * <li>% Identity</li>
@@ -58,11 +60,11 @@ public class ColourSchemeProperty
    * <li>Purine/Pyrimidine</li>
    * <li>T-Coffee Scores</li>
    * <li>RNA Helices</li>
-   * <li>User Defined</li>
-   * <li>an AWT colour name e.g. red</li>
-   * <li>an AWT hex rgb colour e.g. ff2288</li>
-   * <li>residue colours list e.g. D,E=red;K,R,H=0022FF;c=yellow</li>
    * </ul>
+   * <li>the name of a programmatically added colour scheme</li> <li>an AWT
+   * colour name e.g. red</li> <li>an AWT hex rgb colour e.g. ff2288</li> <li>
+   * residue colours list e.g. D,E=red;K,R,H=0022FF;c=yellow</li> </ul>
+   * 
    * If none of these formats is matched, the string is converted to a colour
    * using a hashing algorithm. For name "None", returns null.
    * 
@@ -84,7 +86,7 @@ public class ColourSchemeProperty
      * create a new instance of it
      */
     ColourSchemeI scheme = ColourSchemes.getInstance().getColourScheme(
-            name, forData);
+            name, forData, null);
     if (scheme != null)
     {
       return scheme;