X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FColourSchemeProperty.java;h=cc303d65e21308178bd79cd596701250d85897e8;hb=5002a0f587ac8f1c18117e29bb4be2754743afc2;hp=bb961d33f31cff579560ea7c69179533d5fb508a;hpb=b7e51870168c54685e7cc6f7307400ecf8ddf794;p=jalview.git
diff --git a/src/jalview/schemes/ColourSchemeProperty.java b/src/jalview/schemes/ColourSchemeProperty.java
index bb961d3..cc303d6 100755
--- a/src/jalview/schemes/ColourSchemeProperty.java
+++ b/src/jalview/schemes/ColourSchemeProperty.java
@@ -1,19 +1,21 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.schemes;
@@ -86,15 +88,17 @@ public class ColourSchemeProperty
public static final int COVARIATION = 14;
public static final int TCOFFEE = 15;
-
+
public static final int RNAHELIX = 16;
+ public static final int RNAINTERACTION = 17;
+
/**
* index of first colourscheme (includes 'None')
*/
public static final int FIRST_COLOUR = NONE;
- public static final int LAST_COLOUR = NUCLEOTIDE;
+ public static final int LAST_COLOUR = RNAINTERACTION;
/**
* DOCUMENT ME!
@@ -169,6 +173,10 @@ public class ColourSchemeProperty
{
ret = PURINEPYRIMIDINE;
}
+ else if (name.equalsIgnoreCase("RNA Interaction type"))
+ {
+ ret = RNAINTERACTION;
+ }
else if (name.equalsIgnoreCase("RNA Helices"))
{
ret = RNAHELIX;
@@ -344,6 +352,11 @@ public class ColourSchemeProperty
ret = "T-Coffee Scores";
break;
+
+ case RNAINTERACTION:
+ ret = "RNA Interaction type";
+
+ break;
case RNAHELIX:
ret = "RNA Helices";
@@ -500,15 +513,14 @@ public class ColourSchemeProperty
case TCOFFEE:
cs = new TCoffeeColourScheme(coll);
break;
-
+
case RNAHELIX:
cs = new RNAHelicesColour(coll);
break;
-
- // case COVARIATION:
- // cs = new CovariationColourScheme(annotation);
- // break;
+ // case COVARIATION:
+ // cs = new CovariationColourScheme(annotation);
+ // break;
case USER_DEFINED:
Color[] col = new Color[24];