X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FConsensus.java;h=8295699365932c43d6a26d2a8db6b3e355003974;hb=9bfda76754fb426a471e1c12c9f0ca0c4c1784bc;hp=9d2c7384500332292ee632e5e26a16baab381975;hpb=4f6d92b81a8bedf3d74c81e02e0dbf6600829a60;p=jalview.git

diff --git a/src/jalview/schemes/Consensus.java b/src/jalview/schemes/Consensus.java
index 9d2c738..8295699 100755
--- a/src/jalview/schemes/Consensus.java
+++ b/src/jalview/schemes/Consensus.java
@@ -46,7 +46,8 @@ public class Consensus
     this.mask = setNums(s);
 
     // for (int i=0; i < mask.length; i++) {
-    // System.out.println(mask[i] + " " + ResidueProperties.aa[mask[i]]);
+    // jalview.bin.Console.outPrintln(mask[i] + " " +
+    // ResidueProperties.aa[mask[i]]);
     // }
   }
 
@@ -56,7 +57,7 @@ public class Consensus
   @Deprecated
   public boolean isConserved(int[][] cons2, int col, int size)
   {
-    System.out.println("DEPRECATED!!!!");
+    jalview.bin.Console.outPrintln("DEPRECATED!!!!");
     return isConserved(cons2, col, size, true);
   }
 
@@ -75,7 +76,8 @@ public class Consensus
 
     if (tot > ((threshold * size) / 100))
     {
-      // System.out.println("True conserved "+tot+" from "+threshold+" out of
+      // jalview.bin.Console.outPrintln("True conserved "+tot+" from
+      // "+threshold+" out of
       // "+size+" : "+maskstr);
       return true;
     }