X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FCovariationColourScheme.java;fp=src%2Fjalview%2Fschemes%2FCovariationColourScheme.java;h=dc7971b9e3582b2add896656a7601d8de0608b90;hb=ca8504cf9d10874dce9f07cf7a9d933853fe0dd0;hp=923bd852d1ca56c9a335304c09470d1680d67ad5;hpb=775e7bc104584e88dddcea73fbf02c66f5200c16;p=jalview.git

diff --git a/src/jalview/schemes/CovariationColourScheme.java b/src/jalview/schemes/CovariationColourScheme.java
index 923bd85..dc7971b 100644
--- a/src/jalview/schemes/CovariationColourScheme.java
+++ b/src/jalview/schemes/CovariationColourScheme.java
@@ -20,10 +20,9 @@
  */
 package jalview.schemes;
 
+import jalview.api.AlignViewportI;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AnnotatedCollectionI;
-import jalview.datamodel.SequenceCollectionI;
-import jalview.datamodel.SequenceI;
 import jalview.util.ColorUtils;
 
 import java.awt.Color;
@@ -38,9 +37,9 @@ import java.util.Map;
  */
 public class CovariationColourScheme extends ResidueColourScheme
 {
-  public Map<String, Color> helixcolorhash = new Hashtable<String, Color>();
+  public Map<String, Color> helixcolorhash = new Hashtable<>();
 
-  public Map<Integer, String> positionsToHelix = new Hashtable<Integer, String>();
+  public Map<Integer, String> positionsToHelix = new Hashtable<>();
 
   int numHelix = 0;
 
@@ -51,8 +50,8 @@ public class CovariationColourScheme extends ResidueColourScheme
    * be coloured
    */
   @Override
-  public ColourSchemeI getInstance(AnnotatedCollectionI coll,
-          Map<SequenceI, SequenceCollectionI> hrs)
+  public ColourSchemeI getInstance(AlignViewportI view,
+          AnnotatedCollectionI coll)
   {
     return new CovariationColourScheme(coll.getAlignmentAnnotation()[0]);
   }