X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FFollowerColourScheme.java;h=2cfb072713f55a2b565a5a2d4d20d57b490df5d5;hb=5bf0d6b5cb67e66a38e82692c40426c21ba12593;hp=32e9316af337f255301a655f16ad482ae149daf7;hpb=0416a98d6da9e0fbe42a9676d4ef30c234cb7b12;p=jalview.git

diff --git a/src/jalview/schemes/FollowerColourScheme.java b/src/jalview/schemes/FollowerColourScheme.java
index 32e9316..2cfb072 100644
--- a/src/jalview/schemes/FollowerColourScheme.java
+++ b/src/jalview/schemes/FollowerColourScheme.java
@@ -1,18 +1,42 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.schemes;
 
-import jalview.analysis.Conservation;
+import jalview.api.AlignViewportI;
+import jalview.datamodel.AnnotatedCollectionI;
+import jalview.datamodel.SequenceCollectionI;
+import jalview.datamodel.SequenceI;
 
-import java.util.Hashtable;
+import java.util.Map;
 
 /**
  * Colourscheme that takes its colours from some other colourscheme
+ * 
  * @author jimp
- *
+ * 
  */
 public class FollowerColourScheme extends ResidueColourScheme
 {
 
-  protected ColourSchemeI colourScheme;
+  private ColourSchemeI colourScheme;
 
   public ColourSchemeI getBaseColour()
   {
@@ -20,30 +44,31 @@ public class FollowerColourScheme extends ResidueColourScheme
   }
 
   @Override
-  public void setConsensus(Hashtable[] consensus)
+  public String getSchemeName()
   {
-    if (colourScheme!=null)
-    {
-      colourScheme.setConsensus(consensus);
-    }
+    return "Follower";
   }
 
+  /**
+   * Returns a new instance of this colour scheme with which the given data may
+   * be coloured
+   */
   @Override
-  public void setConservation(Conservation cons)
+  public ColourSchemeI getInstance(AlignViewportI view,
+          AnnotatedCollectionI coll,
+          Map<SequenceI, SequenceCollectionI> hrs)
   {
-    if (colourScheme!=null)
-    {
-      colourScheme.setConservation(cons);
-    }
+    return new FollowerColourScheme();
   }
 
-  @Override
-  public void setConservationInc(int i)
+  protected ColourSchemeI getColourScheme()
+  {
+    return colourScheme;
+  }
+
+  protected void setColourScheme(ColourSchemeI colourScheme)
   {
-    if (colourScheme!=null)
-    {
-      colourScheme.setConservationInc(i);
-    }
+    this.colourScheme = colourScheme;
   }
 
 }