X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FFollowerColourScheme.java;h=57c19e5edb96d9e9fc9668d0dd126d72679af943;hb=136c0793b90b72b928c4d77dc109dd5c644e00d3;hp=da51e0350910e9568c9d02ee02664d93b0d0759e;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git diff --git a/src/jalview/schemes/FollowerColourScheme.java b/src/jalview/schemes/FollowerColourScheme.java index da51e03..57c19e5 100644 --- a/src/jalview/schemes/FollowerColourScheme.java +++ b/src/jalview/schemes/FollowerColourScheme.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,19 +20,22 @@ */ package jalview.schemes; -import jalview.analysis.Conservation; +import jalview.datamodel.AnnotatedCollectionI; +import jalview.datamodel.SequenceCollectionI; +import jalview.datamodel.SequenceI; -import java.util.Hashtable; +import java.util.Map; /** * Colourscheme that takes its colours from some other colourscheme + * * @author jimp - * + * */ public class FollowerColourScheme extends ResidueColourScheme { - protected ColourSchemeI colourScheme; + private ColourSchemeI colourScheme; public ColourSchemeI getBaseColour() { @@ -40,30 +43,30 @@ public class FollowerColourScheme extends ResidueColourScheme } @Override - public void setConsensus(Hashtable[] consensus) + public String getSchemeName() { - if (colourScheme!=null) - { - colourScheme.setConsensus(consensus); - } + return "Follower"; } + /** + * Returns a new instance of this colour scheme with which the given data may + * be coloured + */ @Override - public void setConservation(Conservation cons) + public ColourSchemeI getInstance(AnnotatedCollectionI coll, + Map hrs) { - if (colourScheme!=null) - { - colourScheme.setConservation(cons); - } + return new FollowerColourScheme(); } - @Override - public void setConservationInc(int i) + protected ColourSchemeI getColourScheme() + { + return colourScheme; + } + + protected void setColourScheme(ColourSchemeI colourScheme) { - if (colourScheme!=null) - { - colourScheme.setConservationInc(i); - } + this.colourScheme = colourScheme; } }