X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FJalviewColourScheme.java;h=357ea03a4729cfa9bfae759d82666e464103b3cf;hb=f37c3fd4fe12799de498de5f397252e9f457fee9;hp=185d2b422c2cf5580ccadec1d6b93e0548d2cdf6;hpb=136c0793b90b72b928c4d77dc109dd5c644e00d3;p=jalview.git

diff --git a/src/jalview/schemes/JalviewColourScheme.java b/src/jalview/schemes/JalviewColourScheme.java
index 185d2b4..357ea03 100644
--- a/src/jalview/schemes/JalviewColourScheme.java
+++ b/src/jalview/schemes/JalviewColourScheme.java
@@ -1,6 +1,25 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.schemes;
 
-
 /**
  * An enum with the colour schemes supported by Jalview.
  */
@@ -10,19 +29,22 @@ public enum JalviewColourScheme
    * the order of declaration is the default order in which 
    * items are added to Colour menus
    */
-  Clustal("Clustal", ClustalxColourScheme.class), Blosum62("Blosum62",
-          Blosum62ColourScheme.class), PID("% Identity",
-          PIDColourScheme.class), Zappo("Zappo", ZappoColourScheme.class),
-  Taylor("Taylor", TaylorColourScheme.class), Hydrophobic("Hydrophobic",
-          HydrophobicColourScheme.class), Helix("Helix Propensity",
-          HelixColourScheme.class), Strand("Strand Propensity",
-          StrandColourScheme.class), Turn("Turn Propensity",
-          TurnColourScheme.class), Buried("Buried Index",
-          BuriedColourScheme.class), Nucleotide("Nucleotide",
-          NucleotideColourScheme.class), PurinePyrimidine(
-          "Purine/Pyrimidine", PurinePyrimidineColourScheme.class),
-  RNAHelices("RNA Helices", RNAHelicesColour.class), TCoffee(
-          "T-Coffee Scores", TCoffeeColourScheme.class);
+  Clustal("Clustal", ClustalxColourScheme.class),
+  Blosum62("Blosum62", Blosum62ColourScheme.class),
+  PID("% Identity", PIDColourScheme.class),
+  Zappo("Zappo", ZappoColourScheme.class),
+  Taylor("Taylor", TaylorColourScheme.class),
+  Hydrophobic("Hydrophobic", HydrophobicColourScheme.class),
+  Helix("Helix Propensity", HelixColourScheme.class),
+  Strand("Strand Propensity", StrandColourScheme.class),
+  Turn("Turn Propensity", TurnColourScheme.class),
+  Buried("Buried Index", BuriedColourScheme.class),
+  Nucleotide("Nucleotide", NucleotideColourScheme.class),
+  PurinePyrimidine("Purine/Pyrimidine", PurinePyrimidineColourScheme.class),
+  RNAHelices("RNA Helices", RNAHelicesColour.class),
+  TCoffee("T-Coffee Scores", TCoffeeColourScheme.class),
+  HMMERU("HMMER-Uniprot", HmmerGlobalBackground.class),
+  HMMERA("HMMER-Alignment", HmmerLocalBackground.class);
   // RNAInteraction("RNA Interaction type", RNAInteractionColourScheme.class)
 
   private String name;