X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FNucleotideColourScheme.java;h=0cca608c6dca3563dcd6ebc0ee6e7d22cfc34953;hb=588042b69abf8e60bcc950b24c283933c7dd422f;hp=0f2101e06a089a7fe5d8a1ab3788ba00746b17aa;hpb=5cd8e373c75fb348ecda4d94d8a46468fb92756d;p=jalview.git diff --git a/src/jalview/schemes/NucleotideColourScheme.java b/src/jalview/schemes/NucleotideColourScheme.java index 0f2101e..0cca608 100755 --- a/src/jalview/schemes/NucleotideColourScheme.java +++ b/src/jalview/schemes/NucleotideColourScheme.java @@ -16,39 +16,30 @@ * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ - package jalview.schemes; import java.awt.*; -public class NucleotideColourScheme extends ResidueColourScheme -{ - public NucleotideColourScheme() { - super(ResidueProperties.nucleotide,0); - } - - - public Color findColour(String n) - { - // System.out.println("called"); log.debug - return colors[((Integer)(ResidueProperties.nucleotideHash.get(n))).intValue()]; - } - - - public Color findColour(String n, int j) { - - if (threshold == 0 || aboveThreshold( n, j)) - try - { - return colors[ ( (Integer) (ResidueProperties.nucleotideHash.get(n))).intValue()]; - } - catch (Exception ex) - { - return Color.white; - } - else - return Color.white; - - } +public class NucleotideColourScheme extends ResidueColourScheme { + public NucleotideColourScheme() { + super(ResidueProperties.nucleotide, 0); + } + + public Color findColour(String n) { + // System.out.println("called"); log.debug + return colors[((Integer) (ResidueProperties.nucleotideHash.get(n))).intValue()]; + } + + public Color findColour(String n, int j) { + if ((threshold == 0) || aboveThreshold(n, j)) { + try { + return colors[((Integer) (ResidueProperties.nucleotideHash.get(n))).intValue()]; + } catch (Exception ex) { + return Color.white; + } + } else { + return Color.white; + } + } }