X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FNucleotideColourScheme.java;h=4afb3219a95fa2a62c291434900790ef2f7952de;hb=d587f1aa61946dc14f6f089cf1dc2a3116cfb773;hp=f36bcadec05f46c3f78b7deb3913060a9ea478da;hpb=3d941a02a998676a12f8ff43fa98d9e1f4c27142;p=jalview.git

diff --git a/src/jalview/schemes/NucleotideColourScheme.java b/src/jalview/schemes/NucleotideColourScheme.java
index f36bcad..4afb321 100755
--- a/src/jalview/schemes/NucleotideColourScheme.java
+++ b/src/jalview/schemes/NucleotideColourScheme.java
@@ -78,7 +78,7 @@ public class NucleotideColourScheme extends ResidueColourScheme
         }
 
         if(conservationColouring)
-         applyConservation(currentColour, j);
+         currentColour = applyConservation(currentColour, j);
 
        return currentColour;
     }