X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FPIDColourScheme.java;h=18d7b21fa91d829b9b7f96bdae35f6273a319d37;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=4e07cbade17fcd8093b578af353919902bb49267;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git diff --git a/src/jalview/schemes/PIDColourScheme.java b/src/jalview/schemes/PIDColourScheme.java index 4e07cba..18d7b21 100755 --- a/src/jalview/schemes/PIDColourScheme.java +++ b/src/jalview/schemes/PIDColourScheme.java @@ -1,26 +1,30 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) - * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) + * Copyright (C) 2015 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - * + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.schemes; -import java.awt.*; +import jalview.analysis.AAFrequency; +import jalview.datamodel.SequenceGroup; +import jalview.datamodel.SequenceI; -import jalview.analysis.*; -import jalview.datamodel.*; +import java.awt.Color; public class PIDColourScheme extends ResidueColourScheme { @@ -36,7 +40,8 @@ public class PIDColourScheme extends ResidueColourScheme this.thresholds = ResidueProperties.pidThresholds; } - public Color findColour(char c, int j) + @Override + public Color findColour(char c, int j, SequenceI seq) { if ('a' <= c && c <= 'z') {