X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FPurinePyrimidineColourScheme.java;h=e451135fcdb3a598dfe00f2c6d65ae0fb804f8b9;hb=7d6bf4ac01167499c0f4e07de63edcdd72a6d595;hp=9c43ed1eb7a4b89939cdc32c5aa0bc4bceccb94c;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/src/jalview/schemes/PurinePyrimidineColourScheme.java b/src/jalview/schemes/PurinePyrimidineColourScheme.java index 9c43ed1..e451135 100644 --- a/src/jalview/schemes/PurinePyrimidineColourScheme.java +++ b/src/jalview/schemes/PurinePyrimidineColourScheme.java @@ -20,7 +20,12 @@ */ package jalview.schemes; -import java.awt.*; +import jalview.datamodel.AnnotatedCollectionI; +import jalview.datamodel.SequenceCollectionI; +import jalview.datamodel.SequenceI; + +import java.awt.Color; +import java.util.Map; /** * Class is based off of NucleotideColourScheme @@ -47,6 +52,7 @@ public class PurinePyrimidineColourScheme extends ResidueColourScheme * @return Color from purinepyrimidineIndex in * jalview.schemes.ResidueProperties */ + @Override public Color findColour(char c) { return colors[ResidueProperties.purinepyrimidineIndex[c]]; @@ -87,4 +93,27 @@ public class PurinePyrimidineColourScheme extends ResidueColourScheme return currentColour; } + + @Override + public boolean isNucleotideSpecific() + { + return true; + } + + @Override + public String getSchemeName() + { + return JalviewColourScheme.PurinePyrimidine.toString(); + } + + /** + * Returns a new instance of this colour scheme with which the given data may + * be coloured + */ + @Override + public ColourSchemeI getInstance(AnnotatedCollectionI coll, + Map hrs) + { + return new PurinePyrimidineColourScheme(); + } }