X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FRNAHelicesColour.java;h=33b275d7f192b74ca64f337961b2b694f1bcb35f;hb=5d9222f19e4fbdd9b396853a0442b0e6c5eb98a4;hp=dbc9c03dd6ac5b3ab9c265f915eaa1997a45a1e7;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git

diff --git a/src/jalview/schemes/RNAHelicesColour.java b/src/jalview/schemes/RNAHelicesColour.java
index dbc9c03..33b275d 100644
--- a/src/jalview/schemes/RNAHelicesColour.java
+++ b/src/jalview/schemes/RNAHelicesColour.java
@@ -20,6 +20,7 @@
  */
 package jalview.schemes;
 
+import jalview.api.AlignViewportI;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.AnnotatedCollectionI;
@@ -45,7 +46,7 @@ public class RNAHelicesColour extends ResidueColourScheme
    * Maps sequence positions to the RNA helix they belong to. Key: position,
    * Value: helix TODO: Revise or drop in favour of annotation position numbers
    */
-  public Hashtable<Integer, String> positionsToHelix = new Hashtable<Integer, String>();
+  public Hashtable<Integer, String> positionsToHelix = new Hashtable<>();
 
   /**
    * Number of helices in the RNA secondary structure
@@ -132,7 +133,7 @@ public class RNAHelicesColour extends ResidueColourScheme
       annotation.getRNAStruc();
       lastrefresh = annotation._rnasecstr.hashCode();
       numHelix = 0;
-      positionsToHelix = new Hashtable<Integer, String>();
+      positionsToHelix = new Hashtable<>();
 
       // Figure out number of helices
       // Length of rnasecstr is the number of pairs of positions that base pair
@@ -206,8 +207,8 @@ public class RNAHelicesColour extends ResidueColourScheme
   }
 
   @Override
-  public ColourSchemeI getInstance(AnnotatedCollectionI sg,
-          Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
+  public ColourSchemeI getInstance(AlignViewportI view,
+          AnnotatedCollectionI sg)
   {
     return new RNAHelicesColour(sg);
   }