X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FRNAHelicesColour.java;h=d17f510be1ed9c2b0e63cd07ab5eae05afd67f9f;hb=f6cf71697dde4b4cdc4dcc8941e30fb5c71a5a41;hp=74cc803d1f4dd910aa8ed181fc37063af26f0629;hpb=7fef0501bb64f11080bdb93ee0824416d84784cc;p=jalview.git

diff --git a/src/jalview/schemes/RNAHelicesColour.java b/src/jalview/schemes/RNAHelicesColour.java
index 74cc803..d17f510 100644
--- a/src/jalview/schemes/RNAHelicesColour.java
+++ b/src/jalview/schemes/RNAHelicesColour.java
@@ -40,7 +40,6 @@ import java.util.Map;
 public class RNAHelicesColour extends ResidueColourScheme
 {
 
-
   /**
    * Maps sequence positions to the RNA helix they belong to. Key: position,
    * Value: helix TODO: Revise or drop in favour of annotation position numbers
@@ -61,12 +60,14 @@ public class RNAHelicesColour extends ResidueColourScheme
   {
     super(ResidueProperties.nucleotideIndex);
     this.annotation = annotation;
+    ColourSchemeProperty.resetRnaHelicesShading();
     refresh();
   }
 
   public RNAHelicesColour(AnnotatedCollectionI alignment)
   {
     super(ResidueProperties.nucleotideIndex);
+    ColourSchemeProperty.resetRnaHelicesShading();
     alignmentChanged(alignment, null);
   }