X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FRNAHelicesColourChooser.java;h=5a09a34d2e4802223dfacb6bb96bd5d6ccf6e866;hb=9876fdccf311378e690c1f9e18db52675d427b89;hp=05cffc2d1259bbf27d64ca80e9d96838ea0dae86;hpb=648ab7d29d683f065f1f11c3f8d373c7ca8d1cbf;p=jalview.git

diff --git a/src/jalview/schemes/RNAHelicesColourChooser.java b/src/jalview/schemes/RNAHelicesColourChooser.java
index 05cffc2..5a09a34 100644
--- a/src/jalview/schemes/RNAHelicesColourChooser.java
+++ b/src/jalview/schemes/RNAHelicesColourChooser.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -109,21 +109,7 @@ public class RNAHelicesColourChooser
 
     av.setGlobalColourScheme(rhc);
 
-    if (av.getAlignment().getGroups() != null)
-    {
-      for (SequenceGroup sg : ap.getAlignment().getGroups())
-      {
-        if (sg.cs == null)
-        {
-          continue;
-        }
-
-        sg.cs = new RNAHelicesColour(sg);
-
-      }
-    }
-
-    ap.paintAlignment(false);
+    ap.paintAlignment(true);
   }
 
   void reset()