X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FResidueColourScheme.java;h=4eefcda4599c1d94cdd7d68d9679d386875a5c7f;hb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;hp=3f18595a3d804fa29576e4c642c24d4ce0b93f98;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git

diff --git a/src/jalview/schemes/ResidueColourScheme.java b/src/jalview/schemes/ResidueColourScheme.java
index 3f18595..4eefcda 100755
--- a/src/jalview/schemes/ResidueColourScheme.java
+++ b/src/jalview/schemes/ResidueColourScheme.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -14,6 +14,7 @@
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.schemes;
 
@@ -193,6 +194,11 @@ public class ResidueColourScheme implements ColourSchemeI
   {
     return conservationColouring;
   }
+  @Override
+  public void setConservationApplied(boolean conservationApplied)
+  {
+    conservationColouring = conservationApplied;
+  }
 
   public void setConservationInc(int i)
   {
@@ -305,4 +311,16 @@ public class ResidueColourScheme implements ColourSchemeI
   {
   }
 
+  @Override
+  public ColourSchemeI applyTo(AnnotatedCollectionI sg,
+          Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
+  {
+    try {
+      return getClass().newInstance();
+    }
+    catch (Exception q)
+    {
+      throw new Error("Serious implementation error: cannot duplicate colourscheme "+getClass().getName(), q);
+    }
+  }
 }