X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FResidueProperties.java;h=1e6142d56a24ca4368ea041cc9c6025f3056cc79;hb=c437fc72420baf7b045d417fb6cabcebe87987c5;hp=4d46279ba34d53b63fe75e00b2bc8f82be8bacd6;hpb=a0559d1b4aa6c156f413cde0e7ae5c877cb3cbdb;p=jalview.git

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index 4d46279..1e6142d 100755
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -486,7 +486,7 @@ public class ResidueProperties
           -3, 3, 0, -1, -4 },
       { -2, -2, 1, 6, -3, 0, 2, -1, -1, -3, -4, -1, -3, -3, -1, 0, -1, -4,
           -3, -3, 4, 1, -1, -4 },
-      { 0, 3, -3, -3, 9, -3, -4, -3, -3, -1, -1, -3, -1, -2, -3, -1, -1,
+      { 0, -3, -3, -3, 9, -3, -4, -3, -3, -1, -1, -3, -1, -2, -3, -1, -1,
           -2, -2, -1, -3, -3, -2, -4 },
       { -1, 1, 0, 0, -3, 5, 2, -2, 0, -3, -2, 1, 0, -3, -1, 0, -1, -2, -1,
           -2, 0, 3, -1, -4 },
@@ -625,13 +625,6 @@ public class ResidueProperties
     scoreMatrices.put("DNA", new ScoreMatrix("DNA", DNA, 1));
   }
 
-  public static final Color[] pidColours = { midBlue,
-      new Color(153, 153, 255),
-      // Color.lightGray,
-      new Color(204, 204, 255), };
-
-  public static final float[] pidThresholds = { 80, 60, 40, };
-
   public static List<String> STOP = Arrays.asList("TGA", "TAA", "TAG");
 
   public static String START = "ATG";