X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FResidueProperties.java;h=406814aca9d36bce5f9c4be9ad958d9a292687ea;hb=ee1ce9d286ce8ec18238b74f1cbb19af63b66a7a;hp=f855fde3dcb5250173b8c3883834e4fe38d9137f;hpb=251bd6bbc7324e2235bb663b1b255317817957b1;p=jalview.git

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index f855fde..406814a 100755
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -625,13 +625,6 @@ public class ResidueProperties
     scoreMatrices.put("DNA", new ScoreMatrix("DNA", DNA, 1));
   }
 
-  public static final Color[] pidColours = { midBlue,
-      new Color(153, 153, 255),
-      // Color.lightGray,
-      new Color(204, 204, 255), };
-
-  public static final float[] pidThresholds = { 80, 60, 40, };
-
   public static List<String> STOP = Arrays.asList("TGA", "TAA", "TAG");
 
   public static String START = "ATG";
@@ -935,7 +928,7 @@ public class ResidueProperties
     hydrophobic.put("D", ZERO);
     hydrophobic.put("N", ZERO);
     hydrophobic.put("S", ZERO);
-    hydrophobic.put("T", ZERO);
+    hydrophobic.put("T", ONE);
     hydrophobic.put("P", ZERO);
   }