X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FResidueProperties.java;h=95acf914f9a803be5ce1d6bfe9ce1ce459a3f2f7;hb=bfb23ab859daed1e0abd6840c1399b23ca852770;hp=0a2c43e8d5ef4a6e77e4fc839e72c422a97415a7;hpb=ea697b1077e82809783eeec39230b68605f48f0d;p=jalview.git

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index 0a2c43e..95acf91 100755
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -54,6 +54,29 @@ public class ResidueProperties {
     aaHash.put("B", new Integer(20));
     aaHash.put("Z", new Integer(21));
     aaHash.put("X", new Integer(22));
+    aaHash.put("a", new Integer(0));
+    aaHash.put("r", new Integer(1));
+    aaHash.put("n", new Integer(2));
+    aaHash.put("d", new Integer(3));
+    aaHash.put("c", new Integer(4));
+    aaHash.put("q", new Integer(5));
+    aaHash.put("e", new Integer(6));
+    aaHash.put("g", new Integer(7));
+    aaHash.put("h", new Integer(8));
+    aaHash.put("i", new Integer(9));
+    aaHash.put("l", new Integer(10));
+    aaHash.put("k", new Integer(11));
+    aaHash.put("m", new Integer(12));
+    aaHash.put("f", new Integer(13));
+    aaHash.put("p", new Integer(14));
+    aaHash.put("s", new Integer(15));
+    aaHash.put("t", new Integer(16));
+    aaHash.put("w", new Integer(17));
+    aaHash.put("y", new Integer(18));
+    aaHash.put("v", new Integer(19));
+    aaHash.put("b", new Integer(20));
+    aaHash.put("z", new Integer(21));
+    aaHash.put("x", new Integer(22));
     aaHash.put("-", new Integer(23));
     aaHash.put("*", new Integer(23));
     aaHash.put(".", new Integer(23));