X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FResidueProperties.java;h=f7c13ef9d4c24cb46a7c2ba9b9861266cadab0a8;hb=bd4ea86e9b769bc13505533eec685254038d6b49;hp=0a2c43e8d5ef4a6e77e4fc839e72c422a97415a7;hpb=f133411520d32ce26f766f8157c8d10139920140;p=jalview.git

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index 0a2c43e..f7c13ef 100755
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -19,8 +19,6 @@ package jalview.schemes;
 
 import java.awt.Color;
 import java.util.*;
-import jalview.jbgui.*;
-import jalview.datamodel.*;
 
 public class ResidueProperties {
 
@@ -54,6 +52,29 @@ public class ResidueProperties {
     aaHash.put("B", new Integer(20));
     aaHash.put("Z", new Integer(21));
     aaHash.put("X", new Integer(22));
+    aaHash.put("a", new Integer(0));
+    aaHash.put("r", new Integer(1));
+    aaHash.put("n", new Integer(2));
+    aaHash.put("d", new Integer(3));
+    aaHash.put("c", new Integer(4));
+    aaHash.put("q", new Integer(5));
+    aaHash.put("e", new Integer(6));
+    aaHash.put("g", new Integer(7));
+    aaHash.put("h", new Integer(8));
+    aaHash.put("i", new Integer(9));
+    aaHash.put("l", new Integer(10));
+    aaHash.put("k", new Integer(11));
+    aaHash.put("m", new Integer(12));
+    aaHash.put("f", new Integer(13));
+    aaHash.put("p", new Integer(14));
+    aaHash.put("s", new Integer(15));
+    aaHash.put("t", new Integer(16));
+    aaHash.put("w", new Integer(17));
+    aaHash.put("y", new Integer(18));
+    aaHash.put("v", new Integer(19));
+    aaHash.put("b", new Integer(20));
+    aaHash.put("z", new Integer(21));
+    aaHash.put("x", new Integer(22));
     aaHash.put("-", new Integer(23));
     aaHash.put("*", new Integer(23));
     aaHash.put(".", new Integer(23));