X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FResidueProperties.java;h=f92bfd12601c61862a61f5f7086d55444123003a;hb=7e129811d6ff01074428462284dffc2a6c2395a4;hp=8b1d92b63c9f4a63ab5a09ca259216e5d46b176f;hpb=36ddc5873f52fc3f38aa2605446a0cd77ca94070;p=jalview.git

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index 8b1d92b..f92bfd1 100755
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -91,6 +91,11 @@ public class ResidueProperties
     nucleotideHash.put("G", new Integer(2));
     nucleotideHash.put("T", new Integer(3));
     nucleotideHash.put("U", new Integer(4));
+    nucleotideHash.put("a", new Integer(0));
+    nucleotideHash.put("c", new Integer(1));
+    nucleotideHash.put("g", new Integer(2));
+    nucleotideHash.put("t", new Integer(3));
+    nucleotideHash.put("u", new Integer(4));
   }
 
   // These numbers should correspond to the indices in the Color hashes