X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FScoreColourScheme.java;fp=src%2Fjalview%2Fschemes%2FScoreColourScheme.java;h=6850d79f7c78f765417e87e7a9af99f0895d5bb3;hb=8e1be43e250107a4d86898bd554cf03098fa5957;hp=ec06e0693c1e9bff6868d2bdcb47358a42cd9eb5;hpb=8b55eedb9d76a8c65b80f756c4412bf029906bf7;p=jalview.git

diff --git a/src/jalview/schemes/ScoreColourScheme.java b/src/jalview/schemes/ScoreColourScheme.java
index ec06e06..6850d79 100755
--- a/src/jalview/schemes/ScoreColourScheme.java
+++ b/src/jalview/schemes/ScoreColourScheme.java
@@ -23,6 +23,7 @@ package jalview.schemes;
 import jalview.datamodel.AnnotatedCollectionI;
 import jalview.datamodel.SequenceCollectionI;
 import jalview.datamodel.SequenceI;
+import jalview.util.Comparison;
 
 import java.awt.Color;
 import java.util.Map;
@@ -97,27 +98,12 @@ public class ScoreColourScheme extends ResidueColourScheme
   @Override
   public Color findColour(char c, int j, SequenceI seq)
   {
-    if (threshold > 0)
-    {
-      if (!aboveThreshold(c, j))
-      {
-        return Color.white;
-      }
-    }
-
-    if (jalview.util.Comparison.isGap(c))
+    if (Comparison.isGap(c))
     {
       return Color.white;
     }
 
-    Color currentColour = colors[ResidueProperties.aaIndex[c]];
-
-    if (conservationColouring)
-    {
-      currentColour = applyConservation(currentColour, j);
-    }
-
-    return currentColour;
+    return colors[ResidueProperties.aaIndex[c]];
   }
 
   /**