X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FScoreColourScheme.java;h=1f9116c856defc110eaa95482b456cd11a94ce34;hb=9a88b5f931393037048bf4d8c1c3b871ae585b1c;hp=c11e1ecee6b18adcc25a1f55878a8262f8cde1b6;hpb=95a46891288f4fc63d690cab4f56879678f54fb6;p=jalview.git

diff --git a/src/jalview/schemes/ScoreColourScheme.java b/src/jalview/schemes/ScoreColourScheme.java
index c11e1ec..1f9116c 100755
--- a/src/jalview/schemes/ScoreColourScheme.java
+++ b/src/jalview/schemes/ScoreColourScheme.java
@@ -1,6 +1,6 @@
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
@@ -94,12 +94,12 @@ public class ScoreColourScheme extends ResidueColourScheme
 
         char c = s.charAt(0);
 
-        if (jalview.util.Comparison.isGap((c)))
+        if (jalview.util.Comparison.isGap(c))
         {
             return Color.white;
         }
 
-        currentColour = colors[((Integer) ResidueProperties.aaHash.get(s)).intValue()];
+        currentColour = colors[ ResidueProperties.aaIndex[c] ];
 
         if(conservationColouring)
          applyConservation(j);